Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C09
(330 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28995| Best HMM Match : LicD (HMM E-Value=0.018) 33 0.074
SB_26224| Best HMM Match : VWD (HMM E-Value=0) 30 0.52
SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08) 29 0.69
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 29 1.2
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 28 1.6
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) 27 2.8
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 27 4.9
SB_31737| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_35329| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 26 6.5
>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
Length = 1164
Score = 32.7 bits (71), Expect = 0.074
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 205 DHDRSTHLTKCLLNCRAVVI--NGQHIFTFDGKHLTFPGQ 318
D DRS K L CRA + G H+ DGKHLTF Q
Sbjct: 874 DRDRSG-TKKHLTGCRATYLPSQGAHVCRNDGKHLTFTAQ 912
>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
Length = 736
Score = 29.9 bits (64), Expect = 0.52
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 271 QHIFTFDGKHLTFPGQCRY 327
+H TFDG+H+ F G+C Y
Sbjct: 222 RHYRTFDGRHIDFIGKCSY 240
Score = 29.5 bits (63), Expect = 0.69
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 274 HIFTFDGKHLTFPGQCRYV 330
H +FDGK TF G+C+Y+
Sbjct: 576 HFVSFDGKAFTFGGKCQYL 594
>SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)
Length = 492
Score = 29.5 bits (63), Expect = 0.69
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 66 SGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLLTL 191
+GP S L SPA +P+++ + W L++ S + P L TL
Sbjct: 413 TGPDLKFSKLESPAKLPIYTSASDWQYLEECTSKE-PHLSTL 453
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +1
Query: 163 LETIPTC---LLWFVPTDHDRS--THLTKCLLNCRAVVINGQHIFTFDG 294
L IP C L + T D S TH T LLN ++V NG TF+G
Sbjct: 608 LTQIPNCVPELPSWNATQFDMSGVTHYTGILLNSPSIVSNGGFFITFEG 656
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 238 LLNCRAVVINGQHIFTFDGKHLTFPGQCRYV 330
LL H TFDG+ +F G C YV
Sbjct: 21 LLKATCTAFGDPHYKTFDGRLYSFQGGCNYV 51
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 229 TKCLLNCRAVVINGQHIFTFDGKHLTFPGQCRYV 330
T C C ++ H TFD + + GQC YV
Sbjct: 844 TPCSGTC--TMVGNSHFTTFDSRSYSMHGQCDYV 875
>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
Length = 2822
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 224 WVDRSWSVGTNQSKQVGIVSRYQL 153
WV+ SW+ GT+ S ++G +Y L
Sbjct: 1286 WVEVSWNNGTSNSYRMGADGKYDL 1309
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +1
Query: 244 NCRAVVINGQHIFTFDGKHLTFPG----QCRYV 330
N A++ H+ TFD + FPG +C YV
Sbjct: 1641 NSTAMIFGKPHVSTFDSLYYRFPGYNKPECTYV 1673
>SB_31737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 257 TARQFSRHFVKWVDRS 210
++R FSRH +KW+D S
Sbjct: 22 SSRAFSRHALKWIDLS 37
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 160 ISCLSKLHDASPDHTGMLAGEN 95
+ LS LHD SP+H G G++
Sbjct: 1334 LKMLSTLHDVSPEHYGAPRGDS 1355
>SB_35329| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 660
Score = 26.2 bits (55), Expect = 6.5
Identities = 26/85 (30%), Positives = 37/85 (43%)
Frame = +1
Query: 13 RSVHSRNTYRPRSPVMLLLDLHHGLVICSLLRASRYGLATRHGVCSNS*YLETIPTCLLW 192
R + S Y PRSP LL+DL GL + + G +R V S + T ++W
Sbjct: 135 RLMMSNYWYAPRSPNFLLVDL--GLYGAVITAVASQGYESR-AVRGYSLHFST--DGVMW 189
Query: 193 FVPTDHDRSTHLTKCLLNCRAVVIN 267
T + T L+N VV+N
Sbjct: 190 VHYTQFGQKKIFTGNLMNAWHVVVN 214
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,600,649
Number of Sequences: 59808
Number of extensions: 241808
Number of successful extensions: 550
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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