Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C08
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0071 - 20675501-20675830,20676120-20676286,20676472-206766...    29   1.4  
04_04_0193 + 23482177-23484963                                         28   1.8  
08_01_0200 + 1632883-1633913,1634620-1634677                           27   4.2  
09_04_0389 + 17239182-17239316,17240246-17240878                       26   9.8  
03_06_0474 - 34184002-34184660,34184755-34184887,34185071-341858...    26   9.8  
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396...    26   9.8  

>09_06_0071 -
           20675501-20675830,20676120-20676286,20676472-20676619,
           20676768-20677205,20677667-20677741,20678000-20678283,
           20678940-20679159
          Length = 553

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 185 PTDNVLYTKRVF*KQIFTHIRTRLKRLV 268
           P+DNV Y + VF    F+H + RL R++
Sbjct: 160 PSDNVFYIQFVFIVAFFSHYQYRLLRMI 187


>04_04_0193 + 23482177-23484963
          Length = 928

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -2

Query: 196 IVCGCCSTDTLSVSGGGY*NDLDRSLYV*TRLVWLRII*RTLNVDKPRPIAARSSADRD 20
           I+ GCC+ + + ++GG Y  +   SL     ++  R+  + L+VD         S D D
Sbjct: 722 IISGCCNLENVIITGGEYKGEQPWSLDRTVSMMRYRVPDKPLDVDSVYRPQTSQSLDMD 780


>08_01_0200 + 1632883-1633913,1634620-1634677
          Length = 362

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 149 RVLERSRSFSVCLDSSGLAEDHLTNAECGQAKANC 45
           RVL RS      +D+  LAE H     CG+ K  C
Sbjct: 283 RVLRRSLGVETVIDTMALAEQH----SCGELKEAC 313


>09_04_0389 + 17239182-17239316,17240246-17240878
          Length = 255

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 79 RTL-NVDKPRPIAARSSADRD 20
          RT+ N DKPR +AAR+  D D
Sbjct: 11 RTIGNTDKPRLLAARADTDMD 31


>03_06_0474 -
           34184002-34184660,34184755-34184887,34185071-34185886,
           34186013-34186104,34186710-34186863
          Length = 617

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 94  ARPDESRHTENDLDRSSTRRQKLKACQSNN 183
           A P E RH +  LD S  R+ KL   +  N
Sbjct: 262 ATPSEGRHWQTLLDNSLIRQNKLYCSEPRN 291


>01_06_1507 - 37838645-37839311,37839393-37839499,37839588-37839663,
            37839747-37839869,37840051-37840208,37840311-37840385,
            37840466-37840506,37840594-37840670,37840755-37840883,
            37840990-37841060,37841237-37841332,37841489-37841584,
            37841681-37841953,37842871-37842957,37843101-37843178,
            37843350-37843514,37843622-37843768,37843921-37843983,
            37844082-37844201,37844352-37844543,37844672-37844748,
            37845094-37845196,37845684-37845887
          Length = 1074

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 91   SARPDESRHTENDLDRSSTRR 153
            ++RP +S++  N LDR+S RR
Sbjct: 1046 NSRPQQSQNRYNTLDRNSNRR 1066


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,845,725
Number of Sequences: 37544
Number of extensions: 154585
Number of successful extensions: 395
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)