Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C08
         (353 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48690| Best HMM Match : Attractin (HMM E-Value=2.6)                 28   1.9  
SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097)          27   3.3  
SB_59772| Best HMM Match : dDENN (HMM E-Value=1.6e-24)                 27   3.3  
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   27   5.8  
SB_15308| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-33)                 27   5.8  
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)              27   5.8  
SB_14024| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  

>SB_48690| Best HMM Match : Attractin (HMM E-Value=2.6)
          Length = 224

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 50  WPWLVHIQRSSDDPQPDQTSLDIQ 121
           W W+   QRSS  P P  TSLD+Q
Sbjct: 119 WDWITVDQRSSS-PCPQGTSLDVQ 141


>SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097)
          Length = 1623

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 86  DPQPDQTSLDIQRTI*IVLVPAARN*KRVSRTTPTDNVLYTKRV 217
           +PQ ++  LD+ R I   L+P A    R++  +P    LY KR+
Sbjct: 183 NPQKEERYLDVARDIVTSLLPEAWE-TRIAPPSPPSPSLYIKRI 225


>SB_59772| Best HMM Match : dDENN (HMM E-Value=1.6e-24)
          Length = 423

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 114 TYRERSRSF*YPPPETESVSVEQHPQTMYYILRECFKNKFLHI 242
           T+    R F Y  P  E    +QH       +RE F N+F  I
Sbjct: 251 TFSVEERMFIYGEPAKEISRKQQHENEFNTAIREIFVNRFTQI 293


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 97   RPDESRHTENDLDRSSTRRQKLKACQSNNTH 189
            R  ES HT ND  RSSTR +     + +N H
Sbjct: 970  RSHESVHTPNDHRRSSTRSEHSVQRRYSNEH 1000


>SB_15308| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-33)
          Length = 429

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 34  CFLPQLALACPHSAFVR*SSARPDESRHTENDLDRSSTRRQKLKACQS 177
           C L +  L  P    +  S+  PD +R  ++  ++   +R+K   C S
Sbjct: 93  CVLDESQLQLPRDISIATSTLTPDIARRLKHSQEKKGKKREKRGVCWS 140


>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
          Length = 957

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 134 SRSFSVCLDSSGLAEDHLTNAECGQAKANCGKKQRGPR 21
           SR   +C   +   E    N EC Q K + GKK R PR
Sbjct: 127 SRIVRICYSDNNYVEVQGPNGECVQGKQSFGKK-RIPR 163


>SB_14024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 148 RRQKLKACQSNNTHRQCIIY*ESVLKTNFYTYPNAFKT 261
           +R++   C +  T   C++Y  S+  +NF    N F T
Sbjct: 82  QREQRTTCVNKATRVGCVLYFPSIKTSNFIQLVNPFTT 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,509,670
Number of Sequences: 59808
Number of extensions: 191628
Number of successful extensions: 489
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)