Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C08
         (353 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y00649-1|CAA68674.1| 1032|Homo sapiens CR2 receptor protein.           30   2.4  
M26016-1|AAB04638.1| 1033|Homo sapiens CR2 protein.                    30   2.4  
M26004-1|AAA35786.1| 1033|Homo sapiens CR2 protein.                    30   2.4  
J03565-1|AAA35784.1| 1087|Homo sapiens CR2 protein.                    30   2.4  
EF064746-1|ABK41929.1| 1092|Homo sapiens complement component (3...    30   2.4  
BC090937-1|AAH90937.1| 1033|Homo sapiens complement component (3...    30   2.4  
AL691452-9|CAI16729.1| 1092|Homo sapiens complement component (3...    30   2.4  
AL691452-8|CAI16731.1|  971|Homo sapiens complement component (3...    30   2.4  
AL691452-7|CAI16730.1| 1033|Homo sapiens complement component (3...    30   2.4  
AL391597-7|CAH72950.1| 1092|Homo sapiens complement component (3...    30   2.4  
AL391597-6|CAH72951.1|  971|Homo sapiens complement component (3...    30   2.4  
AL391597-5|CAH72949.1| 1033|Homo sapiens complement component (3...    30   2.4  
AK223627-1|BAD97347.1| 1092|Homo sapiens complement component (3...    30   2.4  
BC031066-1|AAH31066.1|  623|Homo sapiens chromosome 1 open readi...    28   7.2  
BC030026-1|AAH30026.1|  623|Homo sapiens chromosome 1 open readi...    28   7.2  
AL590669-1|CAI16672.1|  623|Homo sapiens chromosome 1 open readi...    28   7.2  
AK093047-1|BAC04033.1|  623|Homo sapiens protein ( Homo sapiens ...    28   7.2  

>Y00649-1|CAA68674.1| 1032|Homo sapiens CR2 receptor protein.
          Length = 1032

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 28  PRCFLPQLALACPHSAFVR*SSARPDESRHTEND 129
           PRC L   A+ CPH   +R       + R+T ND
Sbjct: 340 PRCELSTSAVQCPHPQILRGRMVSGQKDRYTYND 373


>M26016-1|AAB04638.1| 1033|Homo sapiens CR2 protein.
          Length = 1033

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 28  PRCFLPQLALACPHSAFVR*SSARPDESRHTEND 129
           PRC L   A+ CPH   +R       + R+T ND
Sbjct: 340 PRCELSTSAVQCPHPQILRGRMVSGQKDRYTYND 373


>M26004-1|AAA35786.1| 1033|Homo sapiens CR2 protein.
          Length = 1033

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 28  PRCFLPQLALACPHSAFVR*SSARPDESRHTEND 129
           PRC L   A+ CPH   +R       + R+T ND
Sbjct: 340 PRCELSTSAVQCPHPQILRGRMVSGQKDRYTYND 373


>J03565-1|AAA35784.1| 1087|Homo sapiens CR2 protein.
          Length = 1087

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 28  PRCFLPQLALACPHSAFVR*SSARPDESRHTEND 129
           PRC L   A+ CPH   +R       + R+T ND
Sbjct: 340 PRCELSTSAVQCPHPQILRGRMVSGQKDRYTYND 373


>EF064746-1|ABK41929.1| 1092|Homo sapiens complement component
           (3d/Epstein Barr virus) receptor 2 protein.
          Length = 1092

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 28  PRCFLPQLALACPHSAFVR*SSARPDESRHTEND 129
           PRC L   A+ CPH   +R       + R+T ND
Sbjct: 340 PRCELSTSAVQCPHPQILRGRMVSGQKDRYTYND 373


>BC090937-1|AAH90937.1| 1033|Homo sapiens complement component
           (3d/Epstein Barr virus) receptor 2 protein.
          Length = 1033

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 28  PRCFLPQLALACPHSAFVR*SSARPDESRHTEND 129
           PRC L   A+ CPH   +R       + R+T ND
Sbjct: 340 PRCELSTSAVQCPHPQILRGRMVSGQKDRYTYND 373


>AL691452-9|CAI16729.1| 1092|Homo sapiens complement component
           (3d/Epstein Barr virus) receptor 2 protein.
          Length = 1092

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 28  PRCFLPQLALACPHSAFVR*SSARPDESRHTEND 129
           PRC L   A+ CPH   +R       + R+T ND
Sbjct: 340 PRCELSTSAVQCPHPQILRGRMVSGQKDRYTYND 373


>AL691452-8|CAI16731.1|  971|Homo sapiens complement component
           (3d/Epstein Barr virus) receptor 2 protein.
          Length = 971

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 28  PRCFLPQLALACPHSAFVR*SSARPDESRHTEND 129
           PRC L   A+ CPH   +R       + R+T ND
Sbjct: 340 PRCELSTSAVQCPHPQILRGRMVSGQKDRYTYND 373


>AL691452-7|CAI16730.1| 1033|Homo sapiens complement component
           (3d/Epstein Barr virus) receptor 2 protein.
          Length = 1033

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 28  PRCFLPQLALACPHSAFVR*SSARPDESRHTEND 129
           PRC L   A+ CPH   +R       + R+T ND
Sbjct: 340 PRCELSTSAVQCPHPQILRGRMVSGQKDRYTYND 373


>AL391597-7|CAH72950.1| 1092|Homo sapiens complement component
           (3d/Epstein Barr virus) receptor 2 protein.
          Length = 1092

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 28  PRCFLPQLALACPHSAFVR*SSARPDESRHTEND 129
           PRC L   A+ CPH   +R       + R+T ND
Sbjct: 340 PRCELSTSAVQCPHPQILRGRMVSGQKDRYTYND 373


>AL391597-6|CAH72951.1|  971|Homo sapiens complement component
           (3d/Epstein Barr virus) receptor 2 protein.
          Length = 971

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 28  PRCFLPQLALACPHSAFVR*SSARPDESRHTEND 129
           PRC L   A+ CPH   +R       + R+T ND
Sbjct: 340 PRCELSTSAVQCPHPQILRGRMVSGQKDRYTYND 373


>AL391597-5|CAH72949.1| 1033|Homo sapiens complement component
           (3d/Epstein Barr virus) receptor 2 protein.
          Length = 1033

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 28  PRCFLPQLALACPHSAFVR*SSARPDESRHTEND 129
           PRC L   A+ CPH   +R       + R+T ND
Sbjct: 340 PRCELSTSAVQCPHPQILRGRMVSGQKDRYTYND 373


>AK223627-1|BAD97347.1| 1092|Homo sapiens complement component
           (3d/Epstein Barr virus) receptor 2 isoform 1 variant
           protein.
          Length = 1092

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 28  PRCFLPQLALACPHSAFVR*SSARPDESRHTEND 129
           PRC L   A+ CPH   +R       + R+T ND
Sbjct: 340 PRCELSTSAVQCPHPQILRGRMVSGQKDRYTYND 373


>BC031066-1|AAH31066.1|  623|Homo sapiens chromosome 1 open reading
           frame 65 protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 100 PDESRHTENDLDRSSTRRQKLKACQSNNTHR-QC 198
           P ESR  E   D+ S R++KL+  ++   HR QC
Sbjct: 341 PGESRWKEQPEDQESPRQEKLEKARAQAEHRKQC 374


>BC030026-1|AAH30026.1|  623|Homo sapiens chromosome 1 open reading
           frame 65 protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 100 PDESRHTENDLDRSSTRRQKLKACQSNNTHR-QC 198
           P ESR  E   D+ S R++KL+  ++   HR QC
Sbjct: 341 PGESRWKEQPEDQESPRQEKLEKARAQAEHRKQC 374


>AL590669-1|CAI16672.1|  623|Homo sapiens chromosome 1 open reading
           frame 65 protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 100 PDESRHTENDLDRSSTRRQKLKACQSNNTHR-QC 198
           P ESR  E   D+ S R++KL+  ++   HR QC
Sbjct: 341 PGESRWKEQPEDQESPRQEKLEKARAQAEHRKQC 374


>AK093047-1|BAC04033.1|  623|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35728 fis, clone TESTI2003044. ).
          Length = 623

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 100 PDESRHTENDLDRSSTRRQKLKACQSNNTHR-QC 198
           P ESR  E   D+ S R++KL+  ++   HR QC
Sbjct: 341 PGESRWKEQPEDQESPRQEKLEKARAQAEHRKQC 374


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,327,610
Number of Sequences: 237096
Number of extensions: 797313
Number of successful extensions: 1999
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1999
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)