Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C08
         (353 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.26 
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   3.3  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   3.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   4.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   5.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   9.9  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 65  HIQRSSDDPQPDQTSLDIQRTI 130
           H +R +  PQPD+TS D Q TI
Sbjct: 246 HYERRATPPQPDRTSKD-QGTI 266


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 31  RCFLPQLALACPHSAFVR*SSARPD 105
           + F+  LAL C H+ FV   +A PD
Sbjct: 7   QAFIYSLALLCLHAIFV---NAAPD 28


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 31  RCFLPQLALACPHSAFVR*SSARPD 105
           + F+  LAL C H+ FV   +A PD
Sbjct: 7   QAFIYSLALLCLHAIFV---NAAPD 28


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 162 QFLAAGTRTI*IVLCMSRLVW 100
           + +AA    I  +LCMS L W
Sbjct: 283 RMIAASVNLICHILCMSDLHW 303


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 103 DESRHTENDLDRSSTRRQKLKACQSNNTH 189
           D+ +  E DL+  +     L++CQ + TH
Sbjct: 504 DKEKKLE-DLEMGTPLENILESCQQDETH 531


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = +1

Query: 88  SSARPDESRHTENDLDRSSTRRQKLKACQSNNTH 189
           SS   +ESR  +      + +R+K + C+    +
Sbjct: 756 SSTSSEESREEKATTSLEAEKREKSEHCEKGKEY 789


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,948
Number of Sequences: 438
Number of extensions: 1953
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)