Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C08
         (353 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22250.1 68416.m02812 UDP-glucoronosyl/UDP-glucosyl transfera...    28   1.6  
At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to ...    27   2.7  
At5g04320.1 68418.m00424 expressed protein                             27   3.6  

>At3g22250.1 68416.m02812 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 164 FSFWRRVLERSRSFSVCLDSSGLAE-DHLTNAECGQAKAN-CGKKQRGPRHHFL 9
           F FW+R LER++S    L SS   E + + N +    K+N   K+  G     L
Sbjct: 192 FKFWQRTLERTKSLRWILTSSFKDEYEDVDNHKASYKKSNDLNKENNGQNPQIL 245


>At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to
           embryonic flower 1 [Arabidopsis thaliana] GI:15430697
          Length = 1096

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 1   ARGRK*CLGPRCFLPQLALACPHSAFVR*SSARPDESRHTENDL 132
           A G++ C GP    P+ +  C H+A V  SS+RP ++  +E+ +
Sbjct: 818 ANGKQKC-GPN---PEFSFGCKHAAGVSSSSSRPIDNFSSESSI 857


>At5g04320.1 68418.m00424 expressed protein
          Length = 419

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 52  ALACPHSAFVR*SSARPDESRHTENDLDRS---STRRQKLK 165
           ++    SA  R  S  P ESRH   ++ R    STRRQ  K
Sbjct: 302 SIVIEESAGSRSESVEPSESRHETKEITRKRSFSTRRQSTK 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,193,989
Number of Sequences: 28952
Number of extensions: 126323
Number of successful extensions: 289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)