Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C07
(237 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-10
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.036
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069) 32 0.063
SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.11
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.19
SB_59068| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.19
SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.19
SB_1944| Best HMM Match : DUF1482 (HMM E-Value=7.3) 29 0.44
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 0.44
SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059) 29 0.59
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.78
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30) 29 0.78
SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.0
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.0
SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1) 28 1.0
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.4
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.4
SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17) 27 1.8
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 27 2.4
SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 27 2.4
SB_26083| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 26 4.1
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 26 4.1
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 26 4.1
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_18215| Best HMM Match : DUF1168 (HMM E-Value=3.7) 26 5.5
SB_58418| Best HMM Match : DUF1110 (HMM E-Value=3.7) 26 5.5
SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17) 26 5.5
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08) 26 5.5
SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4) 25 7.2
SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21) 25 7.2
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 25 7.2
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 25 7.2
SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19) 25 7.2
SB_45508| Best HMM Match : PT (HMM E-Value=7) 25 7.2
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_7620| Best HMM Match : Remorin_N (HMM E-Value=5.2) 25 7.2
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 25 9.6
SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.6
SB_10561| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.6
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.6
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14) 25 9.6
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.6
SB_11782| Best HMM Match : P53_tetramer (HMM E-Value=3.3e-11) 25 9.6
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 25 9.6
SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26) 25 9.6
>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 60.5 bits (140), Expect = 2e-10
Identities = 26/37 (70%), Positives = 30/37 (81%)
Frame = +3
Query: 60 EGFEGQMTADNIEVGICDASGFRRLEPAHVKDYLANI 170
E FEGQMT DNIE+G+C+ +GFRRL P VKDYLA I
Sbjct: 29 ESFEGQMTEDNIELGVCNENGFRRLTPPEVKDYLAAI 65
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 33.1 bits (72), Expect = 0.036
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = -1
Query: 144 EPVPVSGTRLRHKYPLRYYPPSSDPR----TPP--SASGSPCGQHHPVPDPPS 4
EP+P + T + K ++Y PP P+ +PP S +G+P + HP P PS
Sbjct: 394 EPIP-NATPIMAKDAVKYEPPQQQPQQQRQSPPQPSPTGAPPQRPHPPPQQPS 445
>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
Length = 135
Score = 32.3 bits (70), Expect = 0.063
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -1
Query: 87 PPSSDPRTPPSASGSPCGQHHPVPDPPS 4
PP+S P P SG P Q HP P PS
Sbjct: 90 PPTSQPYGAPPTSGYPGYQQHPPPPQPS 117
>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = -1
Query: 144 EPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVP 16
+P P G H P Y T P A G P GQH P P
Sbjct: 603 QPSPPHGGHPHHPPPTGYPGGYPGTHTAPPAGGYPTGQHPPPP 645
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -1
Query: 147 REPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPP 7
R +P + + K PL YPP + P+T P P P PP
Sbjct: 639 RPSLPGTPPETKTKPPLAPYPPKTSPKTTPKPHIPPAPSRPPPQLPP 685
>SB_59068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 30.7 bits (66), Expect = 0.19
Identities = 19/42 (45%), Positives = 19/42 (45%)
Frame = -1
Query: 141 PVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVP 16
P P SG L H YP PSS P S SG C HP P
Sbjct: 93 PPPPSGRCLAHPYPFSQKAPSSTTSPPLSPSGR-C-LAHPYP 132
Score = 29.1 bits (62), Expect = 0.59
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -1
Query: 156 SPSREPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVP 16
S + P+ SG L H YP PSS PP C HP P
Sbjct: 114 STTSPPLSPSGRCLAHPYPFSQKAPSSTTSPPPPG----CYLAHPYP 156
>SB_5350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 87 PPSSDPRTPPSASGSPCGQHHPVPDPP 7
PPS+ TP S +PC P P PP
Sbjct: 357 PPSTPAPTPAPLSSTPCAPFAPPPPPP 383
>SB_1944| Best HMM Match : DUF1482 (HMM E-Value=7.3)
Length = 491
Score = 29.5 bits (63), Expect = 0.44
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -1
Query: 153 PSREPVP-VSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQH---HPVPDPP 7
PS PV + G + + P+ + P P +P P GQH PVPDPP
Sbjct: 401 PSLRPVTHLPGGQCQSLRPVPHLPDGQRP-SPRPVPDPPDGQHLSPRPVPDPP 452
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Frame = -1
Query: 87 PPSSDPRTPPSASGSPCGQH---HPVPDPP 7
PP +P P GQH PVPDPP
Sbjct: 437 PPDGQHLSPRPVPDPPDGQHLSPRPVPDPP 466
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 29.5 bits (63), Expect = 0.44
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -1
Query: 135 PVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPPS 4
P S +++ P PP S P PP S SP P P PPS
Sbjct: 195 PTSPSQITQPPPPPPRPPPSPPPPPPPPSPSP--PRPPPPPPPS 236
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -1
Query: 87 PPSSDPRTPPSASGSPCGQHHPVPDPP 7
PPS P PP + P P P PP
Sbjct: 212 PPSPPPPPPPPSPSPPRPPPPPPPSPP 238
>SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059)
Length = 399
Score = 29.1 bits (62), Expect = 0.59
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -1
Query: 135 PVSG--TRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDP 10
PV G T RH Y YY SS +P ++ P G HH P P
Sbjct: 258 PVDGIITGHRHTYHYHYYTSSSSLPSPQTSP--PGGWHHYRPSP 299
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 28.7 bits (61), Expect = 0.78
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -1
Query: 156 SPSREPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQH 28
SPS PVS R + P R+ PR P P +H
Sbjct: 449 SPSPAKTPVSMRTAREESPYRWLTEKKSPRPEPQGCDYPDNEH 491
>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
Length = 508
Score = 28.7 bits (61), Expect = 0.78
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 153 PSREPVPV-SGTRLRHKYPLRYYPP 82
P R P+ + TR R+ YP RYYPP
Sbjct: 470 PYRYYPPIDTTTRYRYYYPYRYYPP 494
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 159 DSPSREPVPV-SGTRLRHKYPLRYYPP 82
D P P+ + TR R+ YP RYY P
Sbjct: 432 DPPIDTTTPIDTTTRYRYYYPYRYYYP 458
>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -1
Query: 153 PSREPVPVSGTRLRHKYPLR--YYPPSSDPRTPPSASGSPCGQHHPVPDPP 7
PS + P SG YP + YYP + P PP + G P+P PP
Sbjct: 135 PSTQQQPGSGG-YPMMYPQQPGYYPAGTAP--PPYSEAGVAGTSEPLPPPP 182
>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1981
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 119 ACVTNTHFDIIRRHLTLEPLLQRQDRRVDSIIQF 18
AC TNT F+ + LTL+P + R++S + F
Sbjct: 1660 ACFTNTSFNYLGNSLTLQPNNRVDLSRMESALSF 1693
>SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1)
Length = 183
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -1
Query: 162 RDSPSREPVPVSGTRLRHKYPLRYYPPSSDPRTPP 58
R S SR+ +P SG R R P PP DP P
Sbjct: 149 RRSASRDRIPSSGGRRRSPSPSGPRPPRFDPTAYP 183
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -1
Query: 105 YPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPP 7
+P R PS P S S SP G P P PP
Sbjct: 893 FPRRNESPSQTPGGSESPSASPPGGSVPPPPPP 925
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 93 YYPPSSDPRTPPSASGSPCGQHHPVPDPPS 4
Y PP + P PP + +P + P P PP+
Sbjct: 187 YPPPPNPPYPPPPNAPNPPPPNPPYPPPPN 216
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 102 PLRYYPPSSDPRTPPSASGSPCGQHHPVPDPPS 4
P Y PP + P PP + P + P P PP+
Sbjct: 105 PPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPN 137
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 93 YYPPSSDPRTPPSASGSPCGQHHPVPDPPS 4
Y PP + P PP + P + P P PP+
Sbjct: 124 YPPPPNPPYPPPPNAPYPPSPNAPYPPPPN 153
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 105 YPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPP 7
YP YPP +P PP + P + P P+PP
Sbjct: 156 YPPPLYPPPPNP--PPPNAPYPPPPYPPPPNPP 186
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = -1
Query: 153 PSREPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGS-PCGQHHPVPDPPS 4
P P P + YP YPP +P PP + P + P P PP+
Sbjct: 158 PPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPN 208
>SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)
Length = 1590
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 117 LRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPPS 4
LR++ LR Y P+ P P + SG+P PD PS
Sbjct: 1468 LRNRRFLRAYTPAL-PTIPQAPSGAPAKTPSMAPDAPS 1504
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 87 PPSSDPRTPPSASGSPCGQHHPVPDPPS 4
PP P PP +S SP P P PP+
Sbjct: 1158 PPPPPPPPPPPSSPSPPPPPPPPPPPPT 1185
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = -1
Query: 153 PSREPVPVSGTRLRH---KYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPPS 4
P P P +G + H K L PP + PP P +H P P S
Sbjct: 700 PLPPPPPPTGIDIPHSPSKDDLPLPPPPEEVSLPPPDESPPSSKHPPTVSPSS 752
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 81 SSDPRTPPSASGSPCGQHHPVPDPP 7
S P TPP +P P+P PP
Sbjct: 679 SKPPLTPPPPLPTPIASSEPLPLPP 703
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -1
Query: 156 SPSREPVPVSGTRLR-HKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDP 10
+PS P+S R H P PS +P PS+ SP +P DP
Sbjct: 462 NPSISTSPISNPSPRPHPSPHPSSNPSPNPSPNPSSDPSPNPSSNPSSDP 511
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -1
Query: 96 RYYPPSSDPRTPPSASGSPCGQHHPVPDPPS 4
RY P PR PP P P P PP+
Sbjct: 856 RYRRPRPRPRRPPPPPPPPPPPPPPPPPPPA 886
>SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 144 EPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPV 19
EP + G K+ YPP+ P PP A +P G + V
Sbjct: 39 EPYAIRGGSRISKWGGGEYPPNPPPLYPPLAIRTPLGWEYAV 80
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 87 PPSSDPRTPPSASGSPCGQHHPVPDPPSC 1
PP P PP SG+ P P PP C
Sbjct: 694 PPPPPPPPPPLLSGTLPMPPPPPPPPPGC 722
>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1801
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 182 LTLGYISEIVLHVSRFQSPEPACVTNTHFDIIRRHLTLEPL 60
+ G IS H QSP +T + D+ +RHL L L
Sbjct: 680 VVFGQISLFFSHPKSHQSPVDLALTISKSDVAKRHLLLTDL 720
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 159 DSPSREPVPVSGTRLRHKYPLRY-YPPSSDPRTPPSASGSPCGQHHP 22
D PS EP+P +R P PP +P PPS+ SP + P
Sbjct: 924 DIPSPEPLPEVDI-MRSPTPTPPPSPPPKEPTPPPSSKPSPVKEIKP 969
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 87 PPSSDPRTPPSASGSPCGQHHPVPDPP 7
PP S P PP SP P P PP
Sbjct: 374 PPPSPPPPPPPPPPSPPPPPQPPPPPP 400
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -1
Query: 87 PPSSDPRTPPSASGSPCGQHHPVPDPP 7
PPS P PP P P P PP
Sbjct: 375 PPSPPPPPPPPPPSPPPPPQPPPPPPP 401
>SB_26083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 84 PSSDPRTPPSASGSPCGQHHPVPDP 10
PS+ P + P S P G+ HP P
Sbjct: 88 PSNHPTSEPHPSNHPTGEPHPTNHP 112
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -1
Query: 138 VPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPPS 4
+P +G+ + + +P ++ P P+A+ P G+ HP P S
Sbjct: 51 IPTAGSSITN-HPTSEPNATNHPTGEPNATNHPTGEPHPSNHPTS 94
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = -1
Query: 156 SPSREPVPVSGTR---LRHKYPLRYYPPS--SDPRTPPSASGSPCGQHHPVPDP 10
SPSR+PVP T+ +R +P PS +DP+ PS + PV +P
Sbjct: 1917 SPSRDPVPTRFTKSVPVRTSFPTWNPVPSRTADPKISPSTRKRTLSK-RPVNEP 1969
>SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 87 PPSSDPRTPPSASGS 43
PPSS P +PPS+S S
Sbjct: 172 PPSSPPSSPPSSSSS 186
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = -1
Query: 105 YPLRYYPPSSDPRTPPS---ASGSPCGQHHPVP--DPPS 4
YP P SS P PPS +S SP VP PPS
Sbjct: 140 YPPSSSPSSSFPSVPPSSPPSSSSPSSSSPSVPPSSPPS 178
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -1
Query: 102 PLRYYPPSSDPRTPPSASGSPCGQHHPVPDPP 7
P R P P PP P G+ +P P PP
Sbjct: 361 PGRAPQPLGGPPPPPPGRRPPSGKINPPPPPP 392
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Frame = -1
Query: 153 PSREPVPVSGTRLRHKY-----PLRYYPPSSDPRTPPSASGSPCGQHHPVPDPP 7
PSR+ VP+ LR + P+ P S+ PP +P P P PP
Sbjct: 323 PSRDQVPLPPPPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAPQPLGGPPPPPP 376
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 87 PPSSDPRTPPSASGSPCGQHHPVPDPPS 4
PP P PP G P P P PPS
Sbjct: 276 PPGMPPPMPPG--GMPPNMEQPPPPPPS 301
>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1318
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 93 YYPPSSDPRTPPSASGSPCGQH 28
YY P S P + S+SG+ QH
Sbjct: 778 YYTPPSSPESRSSSSGTRASQH 799
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -1
Query: 102 PLRYYPPSSDPRTPPSASGSPCGQHHPVPDPP 7
P R P P PP P G+ +P P PP
Sbjct: 273 PGRAPQPLGGPPPPPPGRRPPSGKINPPPPPP 304
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Frame = -1
Query: 153 PSREPVPVSGTRLRHKY-----PLRYYPPSSDPRTPPSASGSPCGQHHPVPDPP 7
PSR+ VP+ LR + P+ P S+ PP +P P P PP
Sbjct: 235 PSRDQVPLPPPPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAPQPLGGPPPPPP 288
>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -1
Query: 87 PPSSDPRTPPSASGSPCGQHHPVPDPP 7
PP+ P PP + +P G P P P
Sbjct: 103 PPTMPPTPPPPQTPAPPGPDTPAPPAP 129
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 162 RDSPSRE-PVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPP 7
RD ++ PVP S T + P + S PR+ S S SP +H P PP
Sbjct: 477 RDLTKKDRPVPPS-TPPKKTSPDQSRSRSRSPRSHRSTSRSPRRRHSPSVSPP 528
>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 87 PPSSDPRTPPSASGSPCGQHHPVPDPPS 4
PP P PP++ + G H P+ PP+
Sbjct: 224 PPGGPPPFPPTSDPN-MGHHPPISGPPT 250
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -1
Query: 153 PSREPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPP 7
PS P P S + YP P + P PP+ S P Q P P
Sbjct: 514 PSYPPTPSSYLPTQPYYPPPQPYPPTQPSYPPTPSSYPPTQPSYPPTAP 562
>SB_18215| Best HMM Match : DUF1168 (HMM E-Value=3.7)
Length = 338
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 87 PPSSDPRTPPSASGSPC 37
P + +TPP +GSPC
Sbjct: 312 PEEGEKKTPPKQTGSPC 328
>SB_58418| Best HMM Match : DUF1110 (HMM E-Value=3.7)
Length = 474
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 102 PLRYYPPSSDPRTPPSASGSPCGQHHPVPDP 10
PLR Y +D T +AS P H PDP
Sbjct: 433 PLRCYTKDADASTILAASKQPTQLHPDGPDP 463
>SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)
Length = 906
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = -1
Query: 159 DSPSREPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASG-SPCGQHHPVP-DPPS 4
DS E +P T R PP P PP + SP P P DPPS
Sbjct: 563 DSEDNESLPADSTTGTQSTRRRRDPPKHAPSPPPPPTEVSPKYVIRPGPIDPPS 616
>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
Length = 293
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 105 YPLRYYPPSSD-PRTPPSASGSPCGQHHP 22
YP + YPP+ P+T P +G+ H+P
Sbjct: 187 YPPQGYPPTGPYPQTQPGYAGATPQAHYP 215
>SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4)
Length = 773
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 102 PLRYYPPSSDPRTPPSASGSPCGQHHPVPDP 10
PLR Y +D T +AS P H PDP
Sbjct: 440 PLRCYTKDADASTILAASKRPTQLHPDGPDP 470
>SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
Length = 1405
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 150 SREPVPVSGTRLRHKYPLRYYPPSSDPRTPPS 55
+R +P S YP + PPS++P PS
Sbjct: 217 ARNALPSSSLSAISSYPRQQKPPSNNPPAAPS 248
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 9 EDLELDDAVHTAILTLKEGFEGQMTADNIE 98
+DLE DA+H +L + G E + + D +E
Sbjct: 1199 DDLETKDALHKDVLNEERGIEKENSFDWLE 1228
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 159 DSPSREPVPVSGTRLRHKYPLRYYPPSSDPRTPPS 55
+SP R P+P + TR H+ P P + PR S
Sbjct: 75 NSP-RTPLPANSTRRVHQSPRNKLPAYTSPRVHQS 108
>SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19)
Length = 86
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 87 PPSSDPRTPPSASGSPCGQHHPVPDPP 7
PP ++ TPPS + P PV PP
Sbjct: 34 PPGTNIPTPPSPNTPPPVTQPPVTQPP 60
>SB_45508| Best HMM Match : PT (HMM E-Value=7)
Length = 261
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 84 PSSDPRTPPSASGSPCGQHHPVPDPP 7
P + P P S SP Q H P PP
Sbjct: 207 PVNTPNNPRSPKPSPLPQDHRNPPPP 232
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = -1
Query: 162 RDSPSREPVPVSGTRLRHKYPLRYYPPSSDPRTPPSASG--SPCGQHHPVPDPPS 4
+ SP VP+ R P PP P PPS S P Q P+P P+
Sbjct: 1046 KPSPPPSAVPIPPPRKPSPPPSEPAPPPRQP-PPPSTSQPVPPPRQPDPIPTNPA 1099
>SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 48 LTLKEGFEGQMTADNIEVGICDASGFRRLEPAHVKDYLANI 170
+ ++EG M +N+ G G R L+ H KD++ I
Sbjct: 420 IDMREGINKLMLTENLMNGYSIKPGGRTLQLKHYKDWVLEI 460
>SB_7620| Best HMM Match : Remorin_N (HMM E-Value=5.2)
Length = 330
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 102 PLRYYPPSSDPRTPPSASGSPCGQHHPVPDP 10
PLR Y +D T +AS P H PDP
Sbjct: 204 PLRCYTKDADASTILAASKRPTQLHPDGPDP 234
>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 765
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 96 RYYPPSSDPRTPPSASGSPCGQHHPVPDP 10
RYYP +P++ SG+P +H+P +P
Sbjct: 182 RYYP-YGNPQSRYYPSGNPQSRHYPSGNP 209
>SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 78 SDPRTPPSASGSPCGQHHPVPDPPS 4
S PR PP G+P P PPS
Sbjct: 123 SGPRAPPGGPGAPPPPPPPAVVPPS 147
>SB_10561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = -1
Query: 90 YPPSSDPRTPPSASGSPCGQHHPVPD 13
+P +PR P G H+P PD
Sbjct: 272 FPSKKNPRIPAMHHGLVSAVHYPAPD 297
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -1
Query: 87 PPSSDPRTPPSASGSPCGQHHPVPDPP 7
PP P + P G+P H P+ PP
Sbjct: 2185 PPMGAPPSGPPPMGTPPSGHPPMGAPP 2211
>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
Length = 1774
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = -1
Query: 162 RDSPSREPVPVSGTRLRHKYPLRYYPPSSDPRTPPSA--SGSPCGQHHPV 19
RD SRE P GTR + P + ++PR A S H PV
Sbjct: 1410 RDESSRESTPERGTRNALQSPESFSCQRTEPRIFYKALHQASTADYHQPV 1459
>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1189
Score = 25.0 bits (52), Expect = 9.6
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 138 VPVSGTRL--RHKYPLRYYPPSSDPRTPPSASGSPCGQHHPVPDPP 7
VP+ TRL + P PP++ P TPP + P P PDPP
Sbjct: 474 VPLPTTRLPTTAQTPTTILPPTTTP-TPPPTTTEP---QRP-PDPP 514
>SB_11782| Best HMM Match : P53_tetramer (HMM E-Value=3.3e-11)
Length = 484
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 123 TRLRHKYPLRYYPPSSDPRTPPSASG-SPCGQHHPVPD 13
TR ++K PP + PS SG +P G H+ V +
Sbjct: 292 TRKKNKMKNLNTPPPTPDENKPSTSGETPAGSHNGVKE 329
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 25.0 bits (52), Expect = 9.6
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = -1
Query: 156 SPSR-EPVPVSGTRLRHKYPLRY--YPPSSDPRTPPSASGSPCGQHHPVPDP 10
SP R P+P +YP + YPPS PR PPS P P P
Sbjct: 323 SPIRYPPLPSRYPPSPPRYPSSHPRYPPSP-PRYPPSPPRYPSSHPRYPPSP 373
>SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)
Length = 307
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 84 PSSDPRTPPSASGSPCGQHHPVPDP 10
P DP + + SP GQHH P
Sbjct: 171 PQQDPPVDSARARSPRGQHHSKKPP 195
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,219,368
Number of Sequences: 59808
Number of extensions: 138883
Number of successful extensions: 1429
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 16,821,457
effective HSP length: 56
effective length of database: 13,472,209
effective search space used: 296388598
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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