Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C06
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi...    44   1e-05
SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni...    26   3.1  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   5.4  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           25   5.4  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   7.1  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   7.1  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    24   9.4  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    24   9.4  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    24   9.4  

>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
           Tom20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
 Frame = +3

Query: 3   TRVLGYCVYFDQQRRKDPLSKKKLRERRQNAHQNTSRSRTLSGPLPDMSDHEAMQ----- 167
           T  +GY +YFD +RR DP  +K L+ R +  H+   +   L+    D++  EA+Q     
Sbjct: 13  TAAVGYAIYFDYKRRNDPHFRKTLKRRYKKVHEAKKQEEKLATKKFDITVEEALQVVAST 72

Query: 168 ----------RFFLQQIQLGEELLAS--GDLEAGVEHLGQAVAVCGXXXXXXXXXXXXMP 311
                      FF+QQ+  GE+L      +++        A+ V              +P
Sbjct: 73  PVPSSAEEKELFFMQQVARGEQLFQQQPDNIKESAACFYSALKVYPQPVELFAIYERTVP 132

Query: 312 APIFHLL 332
            PI +LL
Sbjct: 133 EPIMNLL 139


>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
           3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 443 YIYILTMNYSLNIFILHNITRFH*GPKSFRDFWKLLQEKMEDRR 312
           Y++IL     L I +L+N+   +  P+++ D  K ++E  +  R
Sbjct: 39  YLFILAFGSYLGITLLYNVATTNDKPEAYVDLVKDIKEAQDALR 82


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 290 RAPTNNASADLPSSLEEASRSLGTTSGLNESE 385
           R P+ +A+  +  SLE +   L   S ++ESE
Sbjct: 7   RLPSTSANHSISESLEHSKSELNELSNVSESE 38


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 151 IMRLCK--DSSCNRFSLVKSYW 210
           + ++CK  + SC RF+  K YW
Sbjct: 85  VQKVCKKLNISCRRFNFEKEYW 106


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 296 PTNNASADLPSSLEEASRSLG 358
           P NN SA  PSSL+ ++  +G
Sbjct: 537 PQNNISAPTPSSLQSSNAPVG 557


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 39  QRRKDPLSKKKLRERRQNAHQNTSRSRTLSGPLP 140
           Q  ++PLS+   RE   +AHQ T R+R     LP
Sbjct: 54  QLLEEPLSRPITRETDSSAHQET-RTRLEENNLP 86


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 268 PQTATA*PRCSTPASRSPLANNSSPS 191
           P ++T+ P  + PAS SPLA+   PS
Sbjct: 388 PNSSTSNPS-TAPASASPLASTLKPS 412


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 308 ASADLPSSLEEASRSLGTTSGLNESE 385
           AS  LP+  +  SRS  ++S +NESE
Sbjct: 504 ASLPLPNGNDTISRSSESSSPINESE 529


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 296 EHAKQLLCLTTDSNSLTEVLHSS 228
           +HAK+    T  SNSLT++LH+S
Sbjct: 251 KHAKR----TASSNSLTDLLHAS 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,962
Number of Sequences: 5004
Number of extensions: 31131
Number of successful extensions: 227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)