Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C06
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1004 + 8500584-8501881,8502194-8502402,8503024-8503266,850...    30   0.99 
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352...    28   4.0  
02_01_0257 - 1695902-1696393                                           28   4.0  
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964...    27   5.3  
02_03_0332 + 17834876-17834887,17835013-17835972                       27   7.0  

>07_01_1004 +
           8500584-8501881,8502194-8502402,8503024-8503266,
           8503381-8503697,8503891-8504250
          Length = 808

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 114 SRTLSGPLPDMSDHEAMQRFFLQQIQLGEELLASGDLEAGVEHL 245
           + TL G +P  ++   ++  FL   +L   L  +GDL  G+E L
Sbjct: 133 NNTLQGTIPSFANCSELRALFLDGNELAGGLPGAGDLPVGIEAL 176


>07_01_0467 -
           3524598-3524837,3524939-3525466,3526242-3526892,
           3527015-3527500,3527580-3527792,3527885-3528174,
           3528276-3528418,3528633-3528855,3528983-3529160,
           3529598-3529867
          Length = 1073

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 21  CVYFDQQRRKDPLSKKKLRERRQNAHQNT 107
           CV  ++  +K  +SKK+ R+ +Q AH +T
Sbjct: 762 CVTEEKTNKKSSVSKKQKRKNKQAAHSDT 790


>02_01_0257 - 1695902-1696393
          Length = 163

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +3

Query: 36  QQRRKDPLSKKKLRERRQNAHQNTSRSRTLSGPLPDMSDHEAMQRFFLQQIQLGEELLAS 215
           +QR  D L+ +    RR+NAH  T+   T  G L   +++  ++    Q  +L   L + 
Sbjct: 56  KQRHLDDLTAQVAHLRRENAHVATALGLTTQGLLAVDAENAVLR---TQAAELAARLASL 112

Query: 216 GDLEAGVEHLGQAVA 260
            D+ + +   G A A
Sbjct: 113 NDILSCINTNGAAAA 127


>01_07_0383 -
           43195095-43195322,43195408-43195638,43196134-43196454,
           43196512-43196589,43196664-43197727,43197813-43198503,
           43198743-43199541,43200010-43200158,43200159-43200286,
           43200389-43200494,43200835-43200843,43201332-43201821,
           43201896-43202554,43203759-43203851,43204044-43204196,
           43205092-43205194,43205376-43205467,43206229-43206306,
           43206987-43207049,43207339-43207512
          Length = 1902

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 81  RRQNAHQNTSRSRTLSGPLPDMSDHEAMQRFFLQQIQLGEELLAS 215
           R  ++ +NTS S+ LSG L       +M ++FL  ++    ++ S
Sbjct: 278 RDNSSSENTSLSKVLSGTLSSAESAFSMNKYFLDFLKSKSAIIRS 322


>02_03_0332 + 17834876-17834887,17835013-17835972
          Length = 323

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 341 LLQEKMEDR-RWHCLLEHAKQLLCLTTD 261
           +L  K  D+ RWH L+   K ++CL  D
Sbjct: 256 MLSVKSSDKSRWHSLITEVKGMMCLLQD 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,062,169
Number of Sequences: 37544
Number of extensions: 207972
Number of successful extensions: 606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)