Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C06
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30135| Best HMM Match : MAS20 (HMM E-Value=1.5e-06)                100   5e-22
SB_37920| Best HMM Match : DUF755 (HMM E-Value=2.3)                    29   2.3  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   3.1  
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  
SB_43065| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_30135| Best HMM Match : MAS20 (HMM E-Value=1.5e-06)
          Length = 151

 Score =  100 bits (240), Expect = 5e-22
 Identities = 45/118 (38%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
 Frame = +3

Query: 12  LGYCVYFDQQRRKDPLSKKKLRE--RRQNAHQNTSRSRTLSGPLPDMSDHEAMQRFFLQQ 185
           L YC+YFD +RR DP  KKKL E  RR+ A +  + +  +   +PD++D  A+Q+FFL++
Sbjct: 19  LAYCIYFDYKRRSDPDYKKKLIEKRRRERAQRQEADAADMQSRIPDLTDTAAVQKFFLEE 78

Query: 186 IQLGEELLASGDLEAGVEHLGQAVAVCGXXXXXXXXXXXXMPAPIFHLLLKKLPEVSE 359
           +Q+GE+LL  G+ E+ V+HL  AVAVCG            +P  +F +L+  + ++ +
Sbjct: 79  VQIGEDLLTKGEYESAVKHLTNAVAVCGQPQQLLQVFKQTLPPAVFQMLIDNINQMKD 136


>SB_37920| Best HMM Match : DUF755 (HMM E-Value=2.3)
          Length = 193

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 31  LTNSDVRIPCPKRS*ESVDK 90
           +TN D+R+PC K+S   V+K
Sbjct: 44  ITNQDIRVPCKKKSAPDVNK 63


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +3

Query: 72  LRERRQNAHQNTSRSRTLSGPLPDMSDHEAMQRFFLQQIQL--GEELLASGDLEAGVEHL 245
           LRE  ++A +    S+   G  PD+S      +  + +++L  G E   +  +       
Sbjct: 413 LREINKDAFEREKESKNQQGDSPDLSSEYEDLKLEMDELKLRMGRETCRASCINESANAR 472

Query: 246 GQAVAVCG 269
           G+AV V G
Sbjct: 473 GEAVCVLG 480


>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 48  KDPLSKKKLRERRQNAHQNTSRSRTLSGPLPDMSDHEAMQRFFLQQIQLGEE 203
           + PL KKKL  R+ N      ++R+ S  +     HEA  R    + + G++
Sbjct: 394 RQPL-KKKLSARKSNERGGVEKTRSKSEKVAPPKGHEAKVRTVKSESEAGKK 444


>SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 45  RKDPLSKKKLRERRQNAHQNTSRSRTLSGP--LPDMSDHEAMQRFFLQQIQLGEELLASG 218
           R DP ++   R R     +N  R++T+ GP  +P  + ++   R   ++ Q+  + L   
Sbjct: 20  RNDPRTRNDPRTRNDPRTRNDCRTKTIPGPEMIPKTTSNDPGTRNDTEESQMVGKALTHD 79

Query: 219 DLE 227
           D++
Sbjct: 80  DVK 82


>SB_43065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 302 NNASADLPSSLEEASRSLGTTSGLNESE 385
           NN SAD+ SS    + +L TT G ++SE
Sbjct: 32  NNTSADVDSSSTLLTSALSTTHGESDSE 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,798,174
Number of Sequences: 59808
Number of extensions: 236705
Number of successful extensions: 617
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)