Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C06
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74472-2|CAA98945.1| 188|Caenorhabditis elegans Hypothetical pr... 89 1e-18
Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical pr... 27 4.8
U23524-1|AAC46822.1| 268|Caenorhabditis elegans Hypothetical pr... 27 4.8
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ... 27 4.8
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical... 27 4.8
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 27 6.3
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 27 6.3
U80447-7|AAB37811.1| 518|Caenorhabditis elegans Hypothetical pr... 27 8.3
AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical ... 27 8.3
>Z74472-2|CAA98945.1| 188|Caenorhabditis elegans Hypothetical
protein F23H12.2 protein.
Length = 188
Score = 89.4 bits (212), Expect = 1e-18
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Frame = +3
Query: 12 LGYCVYFDQQRRKDPLSKKKLRERRQ---NAHQNTSRSRTLSG--PLPDMSDHEAMQRFF 176
LGYC+YFD +R P K K+R++R+ A R +G PD++D MQRFF
Sbjct: 25 LGYCIYFDHKRINAPDYKDKIRQKRRAQAGAGGMAPRRPAAAGNDAAPDVTDPSQMQRFF 84
Query: 177 LQQIQLGEELLASGDLEAGVEHLGQAVAVCGXXXXXXXXXXXXMPAPIFHLLLKKLPEVS 356
LQ++QLGEEL+A+G+++ G H+ AV +CG + F ++++LP
Sbjct: 85 LQEVQLGEELMAAGNVDEGAVHIANAVMLCGESQQLLSIFQQTLSEDQFRAVVQQLPSTR 144
Query: 357 ERL 365
ERL
Sbjct: 145 ERL 147
>Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical
protein T01E8.5 protein.
Length = 1270
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 36 QQRRKDPLSKKKLRERRQNAHQNTSRSRTLSGPLPDMSDHEAMQ 167
+ R K K++ R+R + ++SRSR S D S H M+
Sbjct: 167 RSREKKRRKKERRRKRSSSRSSSSSRSRDRSSRARDTSSHTLMK 210
>Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical
protein T01E8.5 protein.
Length = 1270
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 36 QQRRKDPLSKKKLRERRQNAHQNTSRSRTLSGPLPDMSDHEAMQ 167
+ R K K++ R+R + ++SRSR S D S H M+
Sbjct: 167 RSREKKRRKKERRRKRSSSRSSSSSRSRDRSSRARDTSSHTLMK 210
>U23524-1|AAC46822.1| 268|Caenorhabditis elegans Hypothetical
protein C29F5.3 protein.
Length = 268
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 204 TLHQAESVARRIFA*PHDHSYQVVVHSVYEI 112
T + ES+ +R+FA PH+ Y +V +S ++
Sbjct: 92 TSQRTESLRQRLFALPHEPDYNLVKNSKRQV 122
>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 27.5 bits (58), Expect = 4.8
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 33 DQQRRKDPLSKKKLRERRQNAHQNTSRSRTLSGPLPDMSDHEAMQRFFLQQIQLGEE 203
D ++++D KK ++R +TSR RTLS L D E R + ++ +E
Sbjct: 826 DSEKKEDENGDKKTKKR-----SSTSRRRTLSDHLEDSDKEERASRSKTKMLRKDDE 877
>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 27.5 bits (58), Expect = 4.8
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 33 DQQRRKDPLSKKKLRERRQNAHQNTSRSRTLSGPLPDMSDHEAMQRFFLQQIQLGEE 203
D ++++D KK ++R +TSR RTLS L D E R + ++ +E
Sbjct: 826 DSEKKEDENGDKKTKKR-----SSTSRRRTLSDHLEDSDKEERASRSKTKMLRKDDE 877
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 33 DQQRRKDPLSKKKLRERRQNAHQNTSRSRT 122
D+ R+KD K + RER + + SRSR+
Sbjct: 73 DRDRKKDRKKKDRSRERDRERRSSRSRSRS 102
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 33 DQQRRKDPLSKKKLRERRQNAHQNTSRSRT 122
D+ R+KD K + RER + + SRSR+
Sbjct: 73 DRDRKKDRKKKDRSRERDRERRSSRSRSRS 102
>U80447-7|AAB37811.1| 518|Caenorhabditis elegans Hypothetical
protein F55F8.7 protein.
Length = 518
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 33 DQQRRKDPLSKKKLRERRQNAHQNTSRSRTLSGPLPDMSDHE 158
D++ LSKKKL+E ++ + ++ + +S D D+E
Sbjct: 114 DKKDGSKKLSKKKLKEEKKEKSKKVNKEKKISKTESDDEDNE 155
>AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical
protein F32D1.9 protein.
Length = 513
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 33 DQQRRKDPLSKKKLRERRQNAHQNTSRSR 119
D++R++D ++K RERR + RSR
Sbjct: 442 DRRRKRDDREREKRRERRGDDEDRKKRSR 470
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,438,367
Number of Sequences: 27780
Number of extensions: 173304
Number of successful extensions: 581
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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