BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_C06 (449 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g18480.1 68417.m02741 magnesium-chelatase subunit chlI, chlor... 30 0.63 At4g29510.1 68417.m04210 protein arginine N-methyltransferase, p... 30 0.83 At3g56510.1 68416.m06284 TBP-binding protein, putative similar t... 29 1.9 At3g24715.1 68416.m03103 octicosapeptide/Phox/Bem1p (PB1) domain... 29 1.9 At3g07060.1 68416.m00838 expressed protein ; expression supporte... 27 5.9 At4g03460.1 68417.m00473 ankyrin repeat family protein contains ... 27 7.7 >At4g18480.1 68417.m02741 magnesium-chelatase subunit chlI, chloroplast / Mg-protoporphyrin IX chelatase (CHLI) (CS) (CH42) identical to SP|P161127 Magnesium-chelatase subunit chlI, chloroplast precursor (Mg-protoporphyrin IX chelatase) (Protein CS/CH-42) {Arabidopsis thaliana} Length = 424 Score = 30.3 bits (65), Expect = 0.63 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -1 Query: 413 LNIFILHNITRFH*GPKSFRDFWKLLQEKMEDR 315 L + I+ RF PK FRD +K Q+K++D+ Sbjct: 297 LRVKIVEERARFDSNPKDFRDTYKTEQDKLQDQ 329 >At4g29510.1 68417.m04210 protein arginine N-methyltransferase, putative similar to protein arginine N-methyltransferase 1-variant 2 [Homo sapiens] GI:7453575 Length = 390 Score = 29.9 bits (64), Expect = 0.83 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -1 Query: 449 NGYIYILTMNYSLNIFILHNITRFH*GPKSFRDFWKLLQEKMED 318 N YI+ L + ++ + H + F GPKS WK +ED Sbjct: 297 NDYIHALVAYFDVSFTMCHKLLGFSTGPKSRATHWKQTVLYLED 340 >At3g56510.1 68416.m06284 TBP-binding protein, putative similar to TBP-binding protein ABT1 GI:6518527 from [Mus musculus] Length = 257 Score = 28.7 bits (61), Expect = 1.9 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = +3 Query: 45 RKDPLSKKKLRERR-QNAHQNTSRSRTLSGPLPDMSDHEAMQRFFLQQIQLGEELLASGD 221 +K KKKL+E+ + A + +R +P DH ++ Q +LG LA D Sbjct: 26 QKADRKKKKLKEKLLKEASKADNRGVCYLSRIPPHMDHVRLRHILAQYGELGRIYLAPED 85 Query: 222 LEAGV 236 EA V Sbjct: 86 SEAQV 90 >At3g24715.1 68416.m03103 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein contains Pfam profile PF00564: PB1 domain Length = 756 Score = 28.7 bits (61), Expect = 1.9 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%) Frame = +3 Query: 15 GYCVYFDQQRRKDPLS-----KKKLRERRQNAHQNTS-RSRTLSGPLPDMSDHEAMQRFF 176 G+ YF Q+R++ P S KK+ +E++ H+N R + DM E + F Sbjct: 515 GHSSYFSQERQQSPSSTLNFTKKQTQEKQVQVHRNNDLADRRTQSDILDMKSTEGGETMF 574 >At3g07060.1 68416.m00838 expressed protein ; expression supported by MPSS Length = 648 Score = 27.1 bits (57), Expect = 5.9 Identities = 15/67 (22%), Positives = 27/67 (40%) Frame = +3 Query: 210 ASGDLEAGVEHLGQAVAVCGXXXXXXXXXXXXMPAPIFHLLLKKLPEVSERLRASMKASN 389 ASG++E VE + + +CG MP+ + E+ AS+ +S Sbjct: 369 ASGEIEEVVEGFSKIIEICGQSITEKLSVLEHMPSNWLQQQTAAIASFKEQPSASLLSSF 428 Query: 390 VMQDEDV 410 +D+ Sbjct: 429 TKLGDDI 435 >At4g03460.1 68417.m00473 ankyrin repeat family protein contains ankyrin repeat domains, Pfam:PF00023 Length = 677 Score = 26.6 bits (56), Expect = 7.7 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = +1 Query: 151 IMRLCKDSSCNRFSLVKSYWLAVI*RLEWSTSVRLLLSVVKHSSCLACSNK 303 ++ KD SCN+ + K + A + + V L +K +SCL C+ + Sbjct: 184 LVSFIKDISCNKPGVAKKIYFAKDRHQDNALHVSLKRKHLKVASCLVCAEQ 234 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,920,609 Number of Sequences: 28952 Number of extensions: 162104 Number of successful extensions: 501 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 491 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 501 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 732537840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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