Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C06
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18480.1 68417.m02741 magnesium-chelatase subunit chlI, chlor...    30   0.63 
At4g29510.1 68417.m04210 protein arginine N-methyltransferase, p...    30   0.83 
At3g56510.1 68416.m06284 TBP-binding protein, putative similar t...    29   1.9  
At3g24715.1 68416.m03103 octicosapeptide/Phox/Bem1p (PB1) domain...    29   1.9  
At3g07060.1 68416.m00838 expressed protein ; expression supporte...    27   5.9  
At4g03460.1 68417.m00473 ankyrin repeat family protein contains ...    27   7.7  

>At4g18480.1 68417.m02741 magnesium-chelatase subunit chlI,
           chloroplast / Mg-protoporphyrin IX chelatase (CHLI) (CS)
           (CH42) identical to SP|P161127 Magnesium-chelatase
           subunit chlI, chloroplast precursor (Mg-protoporphyrin
           IX chelatase) (Protein CS/CH-42) {Arabidopsis thaliana}
          Length = 424

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 413 LNIFILHNITRFH*GPKSFRDFWKLLQEKMEDR 315
           L + I+    RF   PK FRD +K  Q+K++D+
Sbjct: 297 LRVKIVEERARFDSNPKDFRDTYKTEQDKLQDQ 329


>At4g29510.1 68417.m04210 protein arginine N-methyltransferase,
           putative similar to protein arginine N-methyltransferase
           1-variant 2 [Homo sapiens] GI:7453575
          Length = 390

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 449 NGYIYILTMNYSLNIFILHNITRFH*GPKSFRDFWKLLQEKMED 318
           N YI+ L   + ++  + H +  F  GPKS    WK     +ED
Sbjct: 297 NDYIHALVAYFDVSFTMCHKLLGFSTGPKSRATHWKQTVLYLED 340


>At3g56510.1 68416.m06284 TBP-binding protein, putative similar to
           TBP-binding protein ABT1 GI:6518527 from [Mus musculus]
          Length = 257

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 45  RKDPLSKKKLRERR-QNAHQNTSRSRTLSGPLPDMSDHEAMQRFFLQQIQLGEELLASGD 221
           +K    KKKL+E+  + A +  +R       +P   DH  ++    Q  +LG   LA  D
Sbjct: 26  QKADRKKKKLKEKLLKEASKADNRGVCYLSRIPPHMDHVRLRHILAQYGELGRIYLAPED 85

Query: 222 LEAGV 236
            EA V
Sbjct: 86  SEAQV 90


>At3g24715.1 68416.m03103 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein  contains Pfam profile
           PF00564: PB1 domain
          Length = 756

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +3

Query: 15  GYCVYFDQQRRKDPLS-----KKKLRERRQNAHQNTS-RSRTLSGPLPDMSDHEAMQRFF 176
           G+  YF Q+R++ P S     KK+ +E++   H+N     R     + DM   E  +  F
Sbjct: 515 GHSSYFSQERQQSPSSTLNFTKKQTQEKQVQVHRNNDLADRRTQSDILDMKSTEGGETMF 574


>At3g07060.1 68416.m00838 expressed protein ; expression supported
           by MPSS
          Length = 648

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/67 (22%), Positives = 27/67 (40%)
 Frame = +3

Query: 210 ASGDLEAGVEHLGQAVAVCGXXXXXXXXXXXXMPAPIFHLLLKKLPEVSERLRASMKASN 389
           ASG++E  VE   + + +CG            MP+         +    E+  AS+ +S 
Sbjct: 369 ASGEIEEVVEGFSKIIEICGQSITEKLSVLEHMPSNWLQQQTAAIASFKEQPSASLLSSF 428

Query: 390 VMQDEDV 410
               +D+
Sbjct: 429 TKLGDDI 435


>At4g03460.1 68417.m00473 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 677

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 151 IMRLCKDSSCNRFSLVKSYWLAVI*RLEWSTSVRLLLSVVKHSSCLACSNK 303
           ++   KD SCN+  + K  + A     + +  V L    +K +SCL C+ +
Sbjct: 184 LVSFIKDISCNKPGVAKKIYFAKDRHQDNALHVSLKRKHLKVASCLVCAEQ 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,920,609
Number of Sequences: 28952
Number of extensions: 162104
Number of successful extensions: 501
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)