Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C05
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   5.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   7.7  

>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 44  IIFVKADVKCRSDEYTPGSQLWTRTNMRTLVAHIRTRSILAIAGVN 181
           ++F+  +V    +   PG+ + TR ++R  +A I   +  AI G N
Sbjct: 332 VLFIMGNVLFLCEMECPGALIRTRNSIRNGIAFILEGAGRAIRGAN 377


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 91  CILITSAFHVSFHENNET 38
           C+L    FH + HE +ET
Sbjct: 120 CVLCAPCFHATNHEGHET 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,518
Number of Sequences: 5004
Number of extensions: 23364
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)