Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C05
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0062 + 17607290-17608852                                         29   1.0  
06_01_0321 + 2328932-2328963,2329084-2329243,2329388-2329576,233...    27   7.3  
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691...    26   9.7  
04_04_0432 + 25157722-25157950,25158045-25158659,25159298-251593...    26   9.7  

>05_04_0062 + 17607290-17608852
          Length = 520

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -2

Query: 102 WDPGVYSSLRHFTSAFTKIMRHSKINLVPN 13
           W P   S L  F S F K  RH K+  VPN
Sbjct: 442 WFPKHSSQLARFKSEFQKTFRHQKLWKVPN 471


>06_01_0321 +
           2328932-2328963,2329084-2329243,2329388-2329576,
           2330406-2330517,2331395-2331474,2332022-2332132,
           2332580-2332666,2332979-2333260,2333804-2333965
          Length = 404

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 106 QLGPRCILITSAFHVSFHENNETQQDKPRAEFLQ 5
           QL  +C  I  A     H+N++  Q KPR++  Q
Sbjct: 295 QLAIKCKKIYQAEFAHMHDNDKKHQSKPRSDDAQ 328


>10_08_1052 -
           22567937-22568329,22568436-22568669,22568787-22569111,
           22569239-22569484,22569576-22569916,22570070-22570150,
           22570275-22570394,22570549-22570650,22570900-22571035,
           22571210-22571362,22572605-22572906
          Length = 810

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/61 (24%), Positives = 23/61 (37%)
 Frame = -1

Query: 208 WYRLLCKFLVYTSNRKYASGTNVSYEXAHVGSSPQLGPRCILITSAFHVSFHENNETQQD 29
           W+   CK     + RKY     +  +     S P L  +  L  +  H  FH   + QQ 
Sbjct: 661 WFHKYCKSRFEPAFRKYPLEEAMEKDNLERTSEPNLNLKSYLQNAYLHPIFHMFEQQQQQ 720

Query: 28  K 26
           +
Sbjct: 721 E 721


>04_04_0432 +
           25157722-25157950,25158045-25158659,25159298-25159380,
           25159906-25159979,25160101-25160151,25160295-25160371,
           25160856-25161595
          Length = 622

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +1

Query: 148 YPKH-TCDCWCKPGTYRVIDTNDCVT-LEHCH 237
           YP +     WCKP    VI    C T L+H H
Sbjct: 478 YPSYGQASGWCKPEQDAVIAAGHCATDLQHLH 509


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,157,542
Number of Sequences: 37544
Number of extensions: 138703
Number of successful extensions: 308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)