Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C05
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                28   2.5  
SB_33986| Best HMM Match : EGF_CA (HMM E-Value=3.5e-17)                28   2.5  
SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)           28   3.3  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.6  
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 

>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 175  CKPGTYRVIDTNDCVT-LEHC 234
            CKPGTY+  D   C++ LE C
Sbjct: 2966 CKPGTYQCADNRKCISVLEVC 2986


>SB_33986| Best HMM Match : EGF_CA (HMM E-Value=3.5e-17)
          Length = 85

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 160 TCDCWCKPGTYRVIDTNDCVTLEHCH*PT 246
           T  C C+PG Y + D   C  L+ C  P+
Sbjct: 21  TFRCICRPGFYLLDDERTCEDLDECSLPS 49


>SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)
          Length = 750

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 11/59 (18%)
 Frame = +2

Query: 95  GSQLWTRT---------NMRTLVAH--IRTRSILAIAGVNQELTE*SIPMIVLH*NTAI 238
           G+Q+WT T         ++  +V H  I  RSIL  +GVN++  E  +  ++LH  TA+
Sbjct: 589 GAQIWTSTKDSPSVDFWDVSKVVHHGTIDCRSILEASGVNEDSHEMRVVCMLLHRRTAL 647


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 169 CWCKPGTYRVIDTNDCVTLEHC 234
           C C PG Y +++   CV ++ C
Sbjct: 609 CTCFPGFYLMMEDQSCVDIDEC 630


>SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 145 SYPKHTCDCWCKPGTYR 195
           +YP+ TC+C+C P   R
Sbjct: 373 AYPRCTCECYCDPNLPR 389


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 142  HSYPKHTCDCWCKPGTYRVIDTNDCVTLEHC 234
            H Y KHTC   C  GT+  +D +D      C
Sbjct: 989  HVYFKHTCVTECPEGTF--VDDSDGADARRC 1017


>SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -1

Query: 169 NRKYASGTNVSYEXAHVGSSPQLGPRCILITSAFHVSFHENNETQQDKPR 20
           NRK     N S   +++ ++ +    CIL+     +   EN +T ++K R
Sbjct: 377 NRKRKWNRNTSVNRSNISANARKACSCILVRFRLLLCSSENRKTVEEKER 426


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 85   VYTW-VPTVD*NQHAHXRSSHSYPKHTCDCWCKPGTYRVIDTNDCV 219
            V TW V ++  N +    S+   P+ TC   C+PGT++   T  C+
Sbjct: 1496 VGTWNVTSIYLNDNQIQWSNGKIPRSTCGDVCQPGTFK-SSTIQCI 1540


>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 136 YEXAHVGSSPQLGPRCILITSAFHVSFHENN 44
           +  AH GSS  +G RC+L T   H S+  N+
Sbjct: 511 HRAAHCGSSRLVGQRCLLKTK--HCSYTYNH 539


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,181,251
Number of Sequences: 59808
Number of extensions: 186287
Number of successful extensions: 378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)