Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C05
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41109-1|ABC48251.1|  248|Caenorhabditis elegans Hypothetical pr...    30   0.54 
U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U43282-3|AAA83614.3|  499|Caenorhabditis elegans Glutamate trans...    27   5.0  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    26   8.8  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    26   8.8  

>U41109-1|ABC48251.1|  248|Caenorhabditis elegans Hypothetical
           protein F52E1.5 protein.
          Length = 248

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 167 SQVCFGYECELRXCACWF*STVGTQVYTHHF 75
           S  C+G  C +  C C+  S VG+++  H+F
Sbjct: 213 SDNCYGLPCRVGKCKCFVGSGVGSKLPVHYF 243


>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 184 GTYRVIDTNDCVTLEHCH*PTRQL*LLLVIDVIRNYLTVVN*LIICLFK 330
           G +RVI T +     H H   R L  +L   ++ +Y+ ++  ++I +F+
Sbjct: 223 GPHRVIATKNEFLKSHIHSKLRNLMCMLHFFIVMHYIKILKFVLIAIFQ 271


>U43282-3|AAA83614.3|  499|Caenorhabditis elegans Glutamate
           transporter family protein4 protein.
          Length = 499

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 107 WTRTNMRTLVAHIRTRSILAIA 172
           WT TN+  LV H++T   +A A
Sbjct: 112 WTTTNIEDLVGHVKTTPCVATA 133


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 160 TCDCWCKPGTYRVIDTNDCVTLE 228
           T  C CK GT+R + ++ C+ +E
Sbjct: 249 TWRCVCKLGTFRPLGSDKCIPIE 271


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
           protein K08E5.3a protein.
          Length = 3767

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 160 TCDCWCKPGTYRVIDTNDCVTLE 228
           T  C CK GT+R + ++ C+ +E
Sbjct: 249 TWRCVCKLGTFRPLGSDKCIPIE 271


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
           cell adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 160 TCDCWCKPGTYRVIDTNDCVTLE 228
           T  C CK GT+R + ++ C+ +E
Sbjct: 249 TWRCVCKLGTFRPLGSDKCIPIE 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,488,677
Number of Sequences: 27780
Number of extensions: 135078
Number of successful extensions: 351
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)