Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C05
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   1.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   9.2  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 123 MLVLVHSWDPGVYSSLRHFTSAFTKI 46
           M++++H  DP + S +  + + +TKI
Sbjct: 156 MVLIIHPGDPRIKSVVTAYKADYTKI 181


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 169 CWCKPGTYRVIDTNDC 216
           C CKPG    ++  +C
Sbjct: 247 CHCKPGYQADVEKQEC 262



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 166 DCWCKPGTYRVIDTNDCVTLE 228
           DCW K  T+R    N   TL+
Sbjct: 873 DCWQKERTHRPTFANLTQTLD 893


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = -1

Query: 52  ENNETQQDKPRAEFLQP 2
           +N+E +  KP+ +++ P
Sbjct: 140 DNDEEEAQKPKEQYIPP 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,203
Number of Sequences: 438
Number of extensions: 1677
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)