Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C05
         (403 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07480.2 68414.m00801 transcription factor IIA large subunit ...    29   1.2  
At1g07480.1 68414.m00800 transcription factor IIA large subunit ...    29   1.2  
At1g07470.1 68414.m00797 transcription factor IIA large subunit,...    29   1.2  
At3g55830.1 68416.m06203 glycosyltransferase family protein 47 s...    27   6.2  

>At1g07480.2 68414.m00801 transcription factor IIA large subunit /
           TFIIA large subunit (TFIIA-L) identical to transcription
           factor IIA large subunit GI:2826884 from [Arabidopsis
           thaliana]
          Length = 375

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 53  VKADVKCRSDEYTPGSQLWTRTNMRTLVAHIRTRSILAIAGVNQELTE 196
           V  DVK R   Y P    WT   +   VA++  R        NQ+ T+
Sbjct: 136 VNIDVKARPSPYMPPPSPWTNPRLDVNVAYVDGRDEPERGNSNQQFTQ 183


>At1g07480.1 68414.m00800 transcription factor IIA large subunit /
           TFIIA large subunit (TFIIA-L) identical to transcription
           factor IIA large subunit GI:2826884 from [Arabidopsis
           thaliana]
          Length = 375

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 53  VKADVKCRSDEYTPGSQLWTRTNMRTLVAHIRTRSILAIAGVNQELTE 196
           V  DVK R   Y P    WT   +   VA++  R        NQ+ T+
Sbjct: 136 VNIDVKARPSPYMPPPSPWTNPRLDVNVAYVDGRDEPERGNSNQQFTQ 183


>At1g07470.1 68414.m00797 transcription factor IIA large subunit,
           putative / TFIIA large subunit, putative nearly
           identical to transcription factor IIA large subunit
           GI:2826884 from [Arabidopsis thaliana]; contains Pfam
           profile: PF03153 transcription factor IIA, alpha/beta
           subunit
          Length = 375

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 53  VKADVKCRSDEYTPGSQLWTRTNMRTLVAHIRTRSILAIAGVNQELTE 196
           V  DVK R   Y P    WT   +   VA++  R        NQ+ T+
Sbjct: 136 VNIDVKARPSPYMPPPSPWTNPRLDVNVAYVDGRDEPERGNSNQQFTQ 183


>At3g55830.1 68416.m06203 glycosyltransferase family protein 47
          similar to exostose-related protein 2, Homo sapiens,
          PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus
          [GI:10443633]
          Length = 334

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 20 TRFILLCLIIFVKADVKCRS 79
          T+F+L C I FV   + CRS
Sbjct: 33 TKFLLFCCIAFVLVTIVCRS 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,802,456
Number of Sequences: 28952
Number of extensions: 116928
Number of successful extensions: 264
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)