Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C04
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    96   2e-21
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    95   4e-21
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    26   2.1  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   2.7  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    25   3.6  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 96.3 bits (229), Expect = 2e-21
 Identities = 50/120 (41%), Positives = 67/120 (55%)
 Frame = +3

Query: 60  MRSVTVKDVNKTKSSKLYRHLKDRK*RFQSYGLGKDSSFQWAXXLAPYDPDWFYVRCAAI 239
           M  V+VKDV+  K    Y     R  +  +              LAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 240 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 419
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +Q+LE + ++EK  +GG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 95.1 bits (226), Expect = 4e-21
 Identities = 41/76 (53%), Positives = 54/76 (71%)
 Frame = +3

Query: 192 LAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKAL 371
           LAPYDPDW+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +
Sbjct: 45  LAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVV 104

Query: 372 QALEALKLVEKVQDGG 419
           Q+LE + ++EK  +GG
Sbjct: 105 QSLEKIGVLEKSDNGG 120


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 9   TSGSPGAAGIRHEAQGKMRSVTVKDVNKTKSSKL 110
           TSG+  ++G  H  +   RSV++  +N T + ++
Sbjct: 492 TSGNRWSSGSSHSKKSAQRSVSMSSLNNTSNGRV 525


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 282 QS*LQQESGYRCDAV*QHSVHKTNQGHR 199
           QS  +++SGY  D V   S H+T + HR
Sbjct: 90  QSFQREDSGYNDDVVTNSSSHRTPRHHR 117


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 195 PXXLPIETSCLYQVHMIGTFTSDLSSDGTVLTILSCS 85
           P  L + +S L+ +  +G     LS D T+L  LSCS
Sbjct: 93  PQKLKLTSSILFFLVAVGVL---LSGDATILLTLSCS 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,200
Number of Sequences: 5004
Number of extensions: 30513
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)