Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C04
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...    97   4e-21
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912...    30   0.87 
11_01_0645 + 5185341-5185568,5185773-5185823                           27   4.6  
11_06_0513 + 24466131-24469487                                         27   8.1  
03_05_0509 - 25032494-25033156                                         27   8.1  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score = 97.5 bits (232), Expect = 4e-21
 Identities = 53/119 (44%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
 Frame = +3

Query: 72  TVKDVNKTKSSKLYR-HLK-DRK*RFQSY-GLGKDSSFQWAXXLAPYDPDWFYVRCAAIL 242
           TVKDVN  +  K Y  HLK   K     +  + K + F+    L PYDPDW+Y R A+I 
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFK---ELPPYDPDWYYTRAASIA 64

Query: 243 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 419
           R IY+R  +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + +++    GG
Sbjct: 65  RKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123


>12_02_0648 +
           21490202-21490296,21490547-21490634,21491216-21491260,
           21491355-21491387,21491480-21491557,21491647-21491690,
           21491765-21491805,21492102-21492184,21492261-21492352,
           21492468-21492537,21492838-21492876,21493670-21493687,
           21494586-21494713,21495235-21495358,21495585-21495716,
           21496092-21496223,21496582-21496665
          Length = 441

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -1

Query: 243 AV*QHSVHKTNQGHREPXXLPIETSCLYQVHMIGTFTSDLSSDGTVLTILSCSHP 79
           A+ ++    +NQ  + P  L    S + Q  ++  F+   SS GT+L I++C HP
Sbjct: 279 AMGEYCSSSSNQS-KVPIILLFSASTIVQSSIVNWFSVH-SSSGTILMIMTCMHP 331


>11_01_0645 + 5185341-5185568,5185773-5185823
          Length = 92

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 249 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 365
           ++ +SP  +  +   + GR+R G  P    R +G IA +
Sbjct: 18  VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56


>11_06_0513 + 24466131-24469487
          Length = 1118

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 234 AILRHIYIRSPVGVKTVTKIFGGRKRN-GVTPSHFCRSSGSIARKALQALEALKLVEKVQ 410
           ++  H  +R+ + ++T   +  G+K      PS +CR    +    LQA +  KL EKV+
Sbjct: 578 SLTAHTDLRTLILLRTQKMVLSGQKSEIKEIPSDYCRYLTYLRVLDLQATKINKLPEKVE 637


>03_05_0509 - 25032494-25033156
          Length = 220

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 32  RNSARGTRQDAFRYSEGCEQDKIVKTVPSLERSEVKVPIIW 154
           R   RGTR+ A     G   + +V    +++  E K P++W
Sbjct: 137 RRGGRGTRRSASAGQAGEIYELLVDEGGAVDSGEKKAPVVW 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,149,067
Number of Sequences: 37544
Number of extensions: 207488
Number of successful extensions: 518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)