Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C04
         (420 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          53   8e-08
SB_16391| Best HMM Match : AMP-binding (HMM E-Value=1.5e-10)           29   1.2  
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_12328| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)                       27   6.3  
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_57182| Best HMM Match : AMP-binding (HMM E-Value=0)                 27   8.3  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 53.2 bits (122), Expect = 8e-08
 Identities = 32/76 (42%), Positives = 37/76 (48%)
 Frame = +3

Query: 192 LAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKAL 371
           LAPYDPDW+Y+R                        GRK  G  PSHF   S S+AR  L
Sbjct: 22  LAPYDPDWYYIRA-----------------------GRKNRGSAPSHFEVGSASVARSVL 58

Query: 372 QALEALKLVEKVQDGG 419
           + LE +KLVEK   GG
Sbjct: 59  KGLEQIKLVEKASTGG 74


>SB_16391| Best HMM Match : AMP-binding (HMM E-Value=1.5e-10)
          Length = 418

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 45  EAQGKMRSVTVKDVNKTKSSKLYRHLKDR 131
           E +G   ++ V D+NK + S  YR  KDR
Sbjct: 26  ERRGGQEALVVYDMNKNRESMTYRQFKDR 54


>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 210 DWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEAL 389
           D +YVR A +     I +  G   + +I   R+R  VTPS    S G    + L  L+ +
Sbjct: 57  DQWYVRDACVSPSENISTNYGSPKLPRIVETRQRGDVTPSPLVLSRGISRERLLTKLDRM 116

Query: 390 KL 395
           +L
Sbjct: 117 QL 118


>SB_12328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 86  HILHCNGTHLALCLVPNSCSTGGSTSLE 3
           H+    G H+  C  PNSC++G   S++
Sbjct: 384 HVGQTCGLHVCYCWCPNSCTSGSGHSVQ 411


>SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)
          Length = 1604

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 420 GRHLEPSLPTSTLQELGELYEQY 352
           G  LEP +P +T  EL EL+E Y
Sbjct: 39  GVELEPLVPRTTAIELRELFESY 61


>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 323  CDTIAFATTKNFSDSLNSNRRADIDVTQYSSTAY 222
            CDT+ + TT+  +   ++ R    D  +YS+T Y
Sbjct: 945  CDTVRYRTTQYDTLRHSTTRTEQCDTVRYSTTRY 978


>SB_57182| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 566

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 36  IRHEAQGKMRSVTVKDVNKTKSSKLYRHLKDR 131
           +R E   +  ++ + D +  +S+  YR LKDR
Sbjct: 27  VRAEQHPETEAIVIYDADMNRSAMTYRQLKDR 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,740,814
Number of Sequences: 59808
Number of extensions: 238835
Number of successful extensions: 623
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)