Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C04
         (420 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   3.4  
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    23   3.4  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    22   7.9  

>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 162 YQVHMIGTFTSDLSSDGTVLTILSCSHPSL*RNASCL 52
           Y V+  G+ ++  SS GT+ T+L+    S+  +AS L
Sbjct: 632 YDVYGKGSTSTTTSSAGTICTVLAEGDKSVSASASNL 668


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 162 YQVHMIGTFTSDLSSDGTVLTILSCSHPSL*RNASCL 52
           Y V+  G+ ++  SS GT+ T+L+    S+  +AS L
Sbjct: 633 YDVYGKGSTSTTTSSAGTICTVLAEGDKSVSASASNL 669


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 15  GSPGAAGIRHEAQGKMRSVTVKDVNKTKSSKLYRHLKDRK*RFQSYGLG 161
           G  G   ++ +  G  +++T    ++  SS   R L       QSYGLG
Sbjct: 251 GGIGDGLLQTDRNGNSKNLTGSPKSQNLSSPTIRSLHISPHHGQSYGLG 299


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,879
Number of Sequences: 2352
Number of extensions: 7654
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 34632603
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)