Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C04
(420 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein pro... 113 2e-25
BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19 p... 113 2e-25
BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19 p... 113 2e-25
BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19 p... 113 2e-25
AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19 p... 113 2e-25
BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19 p... 112 4e-25
AB209470-1|BAD92707.1| 249|Homo sapiens proteasome beta 2 subun... 31 1.6
CR456387-1|CAG30273.1| 1171|Homo sapiens bA494O16.1 protein. 30 2.7
BC117670-1|AAI17671.1| 1171|Homo sapiens zinc finger, BED-type c... 30 2.7
AL117328-2|CAB62924.1| 1171|Homo sapiens protein ( Human DNA seq... 30 2.7
AB014537-1|BAA31612.2| 1175|Homo sapiens KIAA0637 protein protein. 30 2.7
X72498-1|CAA51163.1| 115|Homo sapiens mature inhibin protein. 29 6.3
>M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein
protein.
Length = 145
Score = 113 bits (273), Expect = 2e-25
Identities = 57/120 (47%), Positives = 74/120 (61%)
Frame = +3
Query: 60 MRSVTVKDVNKTKSSKLYRHLKDRK*RFQSYGLGKDSSFQWAXXLAPYDPDWFYVRCAAI 239
M VTVKDVN+ + + + + + LAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 240 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 419
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK QDGG
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG 120
>BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 113 bits (273), Expect = 2e-25
Identities = 57/120 (47%), Positives = 74/120 (61%)
Frame = +3
Query: 60 MRSVTVKDVNKTKSSKLYRHLKDRK*RFQSYGLGKDSSFQWAXXLAPYDPDWFYVRCAAI 239
M VTVKDVN+ + + + + + LAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 240 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 419
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK QDGG
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG 120
>BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 113 bits (273), Expect = 2e-25
Identities = 57/120 (47%), Positives = 74/120 (61%)
Frame = +3
Query: 60 MRSVTVKDVNKTKSSKLYRHLKDRK*RFQSYGLGKDSSFQWAXXLAPYDPDWFYVRCAAI 239
M VTVKDVN+ + + + + + LAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 240 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 419
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK QDGG
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG 120
>BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 113 bits (273), Expect = 2e-25
Identities = 57/120 (47%), Positives = 74/120 (61%)
Frame = +3
Query: 60 MRSVTVKDVNKTKSSKLYRHLKDRK*RFQSYGLGKDSSFQWAXXLAPYDPDWFYVRCAAI 239
M VTVKDVN+ + + + + + LAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 240 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 419
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK QDGG
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG 120
>AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 113 bits (273), Expect = 2e-25
Identities = 57/120 (47%), Positives = 74/120 (61%)
Frame = +3
Query: 60 MRSVTVKDVNKTKSSKLYRHLKDRK*RFQSYGLGKDSSFQWAXXLAPYDPDWFYVRCAAI 239
M VTVKDVN+ + + + + + LAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 240 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 419
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK QDGG
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG 120
>BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19
protein.
Length = 157
Score = 112 bits (270), Expect = 4e-25
Identities = 56/117 (47%), Positives = 73/117 (62%)
Frame = +3
Query: 69 VTVKDVNKTKSSKLYRHLKDRK*RFQSYGLGKDSSFQWAXXLAPYDPDWFYVRCAAILRH 248
VTVKDVN+ + + + + + LAPYD +WFY R A+ RH
Sbjct: 16 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARH 75
Query: 249 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 419
+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK QDGG
Sbjct: 76 LYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG 132
>AB209470-1|BAD92707.1| 249|Homo sapiens proteasome beta 2 subunit
variant protein.
Length = 249
Score = 31.1 bits (67), Expect = 1.6
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +3
Query: 201 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKAL 371
Y P R +LR P G + T + GGR+ G S CR G R+AL
Sbjct: 179 YTPTISRERAVELLRKCLEEGPGGAGSSTALGGGRRSVGQDRSSSCRRKGRGRRRAL 235
>CR456387-1|CAG30273.1| 1171|Homo sapiens bA494O16.1 protein.
Length = 1171
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 373 WRALRAILPDDLQK*EGVTPLRLRPPKILVTVLTPTGE 260
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 332 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 368
>BC117670-1|AAI17671.1| 1171|Homo sapiens zinc finger, BED-type
containing 4 protein.
Length = 1171
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 373 WRALRAILPDDLQK*EGVTPLRLRPPKILVTVLTPTGE 260
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 332 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 368
>AL117328-2|CAB62924.1| 1171|Homo sapiens protein ( Human DNA
sequence from clone RP11-494O16 on chromosome 22
Contains the ZBED4 gene for zinc finger, BED-type
containing 4, the gene for ).
Length = 1171
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 373 WRALRAILPDDLQK*EGVTPLRLRPPKILVTVLTPTGE 260
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 332 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 368
>AB014537-1|BAA31612.2| 1175|Homo sapiens KIAA0637 protein protein.
Length = 1175
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 373 WRALRAILPDDLQK*EGVTPLRLRPPKILVTVLTPTGE 260
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 336 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 372
>X72498-1|CAA51163.1| 115|Homo sapiens mature inhibin protein.
Length = 115
Score = 29.1 bits (62), Expect = 6.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 153 HMIGTFTSDLSSDGTVLTILSCSHPSL*RNASCLVP 46
H+ GT S LS TV+ +C H SC VP
Sbjct: 47 HIAGTSGSSLSFHSTVINHYACGHSPFANLKSCCVP 82
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,129,838
Number of Sequences: 237096
Number of extensions: 1164558
Number of successful extensions: 2267
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2267
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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