Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C04
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    97   6e-21
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    97   6e-21
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U23180-2|AAC46726.3|  249|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical p...    26   9.5  
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical...    26   9.5  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 96.7 bits (230), Expect = 6e-21
 Identities = 47/118 (39%), Positives = 69/118 (58%)
 Frame = +3

Query: 63  RSVTVKDVNKTKSSKLYRHLKDRK*RFQSYGLGKDSSFQWAXXLAPYDPDWFYVRCAAIL 242
           R+ ++KDV++ +++K   H   +  + +               LAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 243 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDG 416
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDG 119


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 96.7 bits (230), Expect = 6e-21
 Identities = 47/118 (39%), Positives = 69/118 (58%)
 Frame = +3

Query: 63  RSVTVKDVNKTKSSKLYRHLKDRK*RFQSYGLGKDSSFQWAXXLAPYDPDWFYVRCAAIL 242
           R+ ++KDV++ +++K   H   +  + +               LAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 243 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDG 416
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDG 119


>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical
           protein F58G4.1 protein.
          Length = 1974

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 92  LVHILHCNGTHLALCLVPNSCSTGG 18
           L+H+LH    H   C++PN     G
Sbjct: 666 LMHMLHQTHPHFIRCIIPNELKKAG 690


>U23180-2|AAC46726.3|  249|Caenorhabditis elegans Hypothetical
           protein C28F5.2 protein.
          Length = 249

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 385 ASRAWRALRAILPDDLQ 335
           ASRAWR L AIL D+L+
Sbjct: 185 ASRAWRTLIAILIDELR 201


>Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 202 MTLIGFMYAVLLYC 243
           M ++GF YAV++YC
Sbjct: 212 MIILGFQYAVIIYC 225


>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
           protein K02B12.5 protein.
          Length = 1204

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 411 LEPSLPTSTLQE-LGELYEQYCQMICRSER 325
           +EP L    L E +G+LY+QY Q +   E+
Sbjct: 299 MEPKLSKCQLYEAIGDLYDQYFQTLMAKEK 328


>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 299 WSQTQWCHTLSLLQIIW 349
           W+Q  W + ++L+Q+IW
Sbjct: 98  WNQLLWIYPMALVQLIW 114


>AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 202 MTLIGFMYAVLLYC 243
           M ++GF YAV++YC
Sbjct: 212 MIILGFQYAVIIYC 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,299,063
Number of Sequences: 27780
Number of extensions: 175451
Number of successful extensions: 435
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)