Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C04
         (420 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.1  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    20   9.9  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               20   9.9  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 12  SGSPGAAGIRHEAQG-KMRSVTVKDVNKTKSS 104
           +GSPG+ GIR +  G K+     + ++ + SS
Sbjct: 285 NGSPGSGGIRSDQMGVKIEPAEAESLSTSGSS 316


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 154 PYDWNLHFRSFK 119
           PY+W L  R +K
Sbjct: 88  PYEWQLILRRYK 99


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 179 LKRAVFTKSI*LEPSLPIFQVTVQF*RFCLVHI 81
           L  AV  ++  +   L I  V+++  R+C++H+
Sbjct: 12  LSVAVIIRANGINEILKIMAVSMKDIRYCIIHM 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,403
Number of Sequences: 438
Number of extensions: 2122
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)