Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C04
         (420 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ...    97   3e-21
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi...    97   4e-21
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ...    94   3e-20
At4g23550.1 68417.m03393 WRKY family transcription factor contai...    27   3.9  
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai...    27   5.2  
At4g37950.1 68417.m05365 expressed protein                             26   9.0  
At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00...    26   9.0  

>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
           RIBOSOMAL PROTEIN S19 - Oryza sativa,
           SWISSPROT:RS19_ORYSA
          Length = 143

 Score = 97.5 bits (232), Expect = 3e-21
 Identities = 42/76 (55%), Positives = 53/76 (69%)
 Frame = +3

Query: 192 LAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKAL 371
           LAPYDPDW+Y+R A++ R IY+R  +GV    +I+GG KRNG  P HFC+SSG IAR  L
Sbjct: 46  LAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHIL 105

Query: 372 QALEALKLVEKVQDGG 419
           Q LE + +VE    GG
Sbjct: 106 QQLETMSIVELDTKGG 121


>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
           to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
          Length = 143

 Score = 97.1 bits (231), Expect = 4e-21
 Identities = 41/76 (53%), Positives = 53/76 (69%)
 Frame = +3

Query: 192 LAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKAL 371
           LAPYDPDW+Y+R A++ R +Y+R  +GV    +I+GG KRNG  P HFC+SSG IAR  L
Sbjct: 46  LAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHIL 105

Query: 372 QALEALKLVEKVQDGG 419
           Q LE + +VE    GG
Sbjct: 106 QQLETMNIVELDTKGG 121


>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
           ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
          Length = 143

 Score = 94.3 bits (224), Expect = 3e-20
 Identities = 38/76 (50%), Positives = 53/76 (69%)
 Frame = +3

Query: 192 LAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKAL 371
           LAPYDPDW+Y+R A++ R +Y+R  +GV    +I+GG KRNG  P HFC+SSG +AR  L
Sbjct: 46  LAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHIL 105

Query: 372 QALEALKLVEKVQDGG 419
           Q L+ + +V+    GG
Sbjct: 106 QQLQTMNIVDLDTKGG 121


>At4g23550.1 68417.m03393 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA binding domain
          Length = 304

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 408 EPSLPTSTLQELGELYEQY 352
           EP + TS L ELGELY+ +
Sbjct: 43  EPEMETSGLDELGELYKPF 61


>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
           Pfam PF04833: Phytochelatin synthetase-like conserved
           region
          Length = 653

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 17  IPRCCRNSARGTRQDAFRYSEGCEQDKIVKTVPSLERSEVKVPIIW 154
           IP CCRN     R      S+   Q ++ K  P L  S +  P  W
Sbjct: 314 IPYCCRNGTILPRSMDPEKSKSVFQIEVYKMPPDLNISSITPPQSW 359


>At4g37950.1 68417.m05365 expressed protein 
          Length = 678

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
 Frame = +3

Query: 75  VKDVNKTKSSKLYRHLKDRK*RFQSYGLGKDSS-------FQWAXXLAPYDPDWFY 221
           + D + T  +KLY +  + + RF+ YGL    S         +   ++ Y  DWFY
Sbjct: 498 IPDPDPTLFTKLYLNYSNPQDRFRQYGLWDRYSVLYPRNDLVFTAGVSDYKKDWFY 553


>At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 479

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 204 DPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRN-GVTPSHFCRS 344
           DP W    CA+   ++ ++ PV V ++T +   +  + G  PS F  S
Sbjct: 131 DPSWISTSCASRYDYVCVQLPVCVYSLTTLESLKIYSCGFDPSKFSNS 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,777,827
Number of Sequences: 28952
Number of extensions: 164115
Number of successful extensions: 405
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)