Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C03
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   156   2e-39
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   156   2e-39
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       30   0.23 
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    28   1.2  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.6  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.0  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.0  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   6.6  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   8.7  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   8.7  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   8.7  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  156 bits (379), Expect = 2e-39
 Identities = 70/94 (74%), Positives = 81/94 (86%), Gaps = 1/94 (1%)
 Frame = +2

Query: 110 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 289
           CYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA
Sbjct: 8   CYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEA 67

Query: 290 GRICCNKYLVKNCGKDQFHIRMR-YTLHVIRIIK 388
            RIC NKYLVK  GKD FH+R+R +  HV+RI K
Sbjct: 68  ARICANKYLVKIGGKDSFHLRVRAHPFHVVRINK 101



 Score =  120 bits (290), Expect = 1e-28
 Identities = 58/85 (68%), Positives = 67/85 (78%), Gaps = 5/85 (5%)
 Frame = +1

Query: 373 HPHH-----KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 537
           HP H     KMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  IEA
Sbjct: 92  HPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEA 151

Query: 538 LRRAKFKFPGRQKIYVSKKWGFTKY 612
           LRR ++KFPG+Q+I VSKKWGF++Y
Sbjct: 152 LRRCQYKFPGQQRIIVSKKWGFSQY 176


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  156 bits (379), Expect = 2e-39
 Identities = 70/94 (74%), Positives = 81/94 (86%), Gaps = 1/94 (1%)
 Frame = +2

Query: 110 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 289
           CYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA
Sbjct: 8   CYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEA 67

Query: 290 GRICCNKYLVKNCGKDQFHIRMR-YTLHVIRIIK 388
            RIC NKYLVK  GKD FH+R+R +  HV+RI K
Sbjct: 68  ARICANKYLVKIGGKDSFHLRVRAHPFHVVRINK 101



 Score =  120 bits (289), Expect = 2e-28
 Identities = 58/85 (68%), Positives = 67/85 (78%), Gaps = 5/85 (5%)
 Frame = +1

Query: 373 HPHH-----KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 537
           HP H     KMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  IEA
Sbjct: 92  HPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEA 151

Query: 538 LRRAKFKFPGRQKIYVSKKWGFTKY 612
           LRR ++KFPG+Q+I VSKKWGF++Y
Sbjct: 152 LRRCQYKFPGQQRIIVSKKWGFSQY 176


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 104 KEC-YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSE 277
           K C Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  
Sbjct: 30  KSCSYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFG 89

Query: 278 ALEAG 292
           +LE+G
Sbjct: 90  SLESG 94


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +1

Query: 418 QTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSK 591
           +T M    G  +   AR+ IG+ +  +      K     AL++A F  PG+ +I V +
Sbjct: 124 ETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKELAEHALKQAAFHLPGKYEIIVKQ 181


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 170 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 289
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 284 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 165
           P P +S+ R  Q+LSA +  S+P   S  PS   GSL  +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +2

Query: 191  DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 334
            ++ KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ KN  K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 458 VPWGFPNAPRIPV 420
           + W FPNAP IPV
Sbjct: 46  IKWIFPNAPSIPV 58


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 286 SRPYLLQQVPRKELR*RSVPHPDEIHPSCHP 378
           S+P ++  +P+ ++    +PHP   HP   P
Sbjct: 181 SKPPVIPNLPKLQVHPNRLPHPIHNHPYSSP 211


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 495 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSA 397
           RH G+S  +++ C L +  +T    LE + S A
Sbjct: 94  RHGGVSLLNSKDCRLKYSSKTAKQYLEKLKSLA 126


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 229 WEVIHCRSLFAQVENTDLWVRHTPT 155
           + ++H  +LFA  EN D ++   PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 107 LSAGRRPIVFSTKRHLSEFLQPG 39
           LS+G+  I+  TK+HL+ F   G
Sbjct: 798 LSSGQNNIIEKTKKHLASFSSEG 820


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 139 IRFILTISITFFPLVGAPLCSPQSDTCPNSCS 44
           I  ILT ++   P+VGA +C    +T    C+
Sbjct: 684 ISSILTFNLLGIPMVGADVCGYNGNTDEELCA 715


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,382
Number of Sequences: 5004
Number of extensions: 60960
Number of successful extensions: 186
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)