Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C03
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 146 1e-35
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 146 2e-35
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 138 2e-33
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.73
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 31 0.96
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 1.7
03_05_0874 - 28429982-28430083,28430284-28430472,28430585-284306... 29 2.2
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 29 3.9
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371 29 3.9
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 5.1
02_01_0759 - 5628913-5630870,5631023-5631047 28 5.1
10_01_0124 - 1504521-1505303 27 8.9
09_06_0319 - 22293869-22293906,22294539-22295808 27 8.9
08_02_0567 + 18769742-18769790,18769928-18771351 27 8.9
06_02_0163 - 12488622-12488717,12488744-12488844,12490765-12490924 27 8.9
06_02_0084 - 11547820-11548773 27 8.9
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 146 bits (354), Expect = 1e-35
Identities = 65/94 (69%), Positives = 77/94 (81%), Gaps = 1/94 (1%)
Frame = +2
Query: 110 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 289
CYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEALEA
Sbjct: 315 CYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEA 374
Query: 290 GRICCNKYLVKNCGKDQFHIRM-RYTLHVIRIIK 388
RI CNKY+ K+ GKD FH+R+ + HV+RI K
Sbjct: 375 ARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINK 408
Score = 122 bits (295), Expect = 2e-28
Identities = 59/86 (68%), Positives = 67/86 (77%), Gaps = 5/86 (5%)
Frame = +1
Query: 373 HPHH-----KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 537
HP+H KMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++SVR D A EA
Sbjct: 399 HPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLSVRCRDANAAHAQEA 458
Query: 538 LRRAKFKFPGRQKIYVSKKWGFTKYE 615
LRRAKFKFPGRQ++ S KWGFT+++
Sbjct: 459 LRRAKFKFPGRQRVIFSAKWGFTRFK 484
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 146 bits (353), Expect = 2e-35
Identities = 65/94 (69%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
Frame = +2
Query: 110 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 289
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +SSEALEA
Sbjct: 8 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEA 67
Query: 290 GRICCNKYLVKNCGKDQFHIRMR-YTLHVIRIIK 388
RI CNKY+ KN GKD FH+R+R + HV+RI K
Sbjct: 68 ARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINK 101
Score = 120 bits (290), Expect = 7e-28
Identities = 60/85 (70%), Positives = 65/85 (76%), Gaps = 5/85 (5%)
Frame = +1
Query: 373 HPHH-----KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 537
HP H KMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR + EA
Sbjct: 92 HPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEA 151
Query: 538 LRRAKFKFPGRQKIYVSKKWGFTKY 612
LRRAKFKFPGRQKI S+KWGFTK+
Sbjct: 152 LRRAKFKFPGRQKIIHSRKWGFTKF 176
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 138 bits (335), Expect = 2e-33
Identities = 62/94 (65%), Positives = 75/94 (79%), Gaps = 1/94 (1%)
Frame = +2
Query: 110 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 289
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 290 GRICCNKYLVKNCGKDQFHIRMR-YTLHVIRIIK 388
RI CNKY+ K+ GKD FH+R+R + HV+RI K
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINK 97
Score = 121 bits (291), Expect = 5e-28
Identities = 60/85 (70%), Positives = 64/85 (75%), Gaps = 5/85 (5%)
Frame = +1
Query: 373 HPHH-----KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 537
HP H KMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR EA
Sbjct: 88 HPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEA 147
Query: 538 LRRAKFKFPGRQKIYVSKKWGFTKY 612
LRRAKFKFPGRQKI S+KWGFTK+
Sbjct: 148 LRRAKFKFPGRQKIIESRKWGFTKF 172
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.73
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 212 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 331
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 30.7 bits (66), Expect = 0.96
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 317 RGTCCNRYGLLPAPQNSAARTHQTLSARIVGSHPLS 210
R CC GL P P S+ R+ +L A S P+S
Sbjct: 179 RSRCCRHRGLSPPPSRSSPRSPSSLPAAPAASLPVS 214
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -3
Query: 488 MGCPIRTRATVPWGFPNAPRIPVWSLSAPAH 396
+ CP+ + + VP P++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>03_05_0874 -
28429982-28430083,28430284-28430472,28430585-28430655,
28430754-28431021,28432579-28432818,28433791-28433979
Length = 352
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 5 STRWRRSXIVDPRAAGIRTGVALWR 79
++ W + +++PRAA RT V LWR
Sbjct: 57 TSSWGKLLLLEPRAAPKRTSVVLWR 81
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 364 PSCHPHHKMLSCAGADRLQTGMRGAFGKPQG---TVARVRIG 480
PS P + C+GA + + RG G+P+G V+R+R G
Sbjct: 41 PSPSPAGYIFMCSGATKPECYARGVMGQPRGRLPAVSRIRRG 82
>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
Length = 437
Score = 28.7 bits (61), Expect = 3.9
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Frame = +2
Query: 20 RSXIVDPRAAGIRTGVALWRTQWGADQR-----KECY-RYCKNKPYPKSRFCRGVPDPKI 181
R ++ + I+ +AL R W ++ KE Y +CK+ P KS + G+P P
Sbjct: 102 RLKVLKRKYYAIKDMLALPRFSWDGMRKMIQCEKELYDAHCKDHPRAKSLY--GIPFPYF 159
Query: 182 RIFDL--GKKRATVDDFPLCVHLVSDEYEQLSSE 277
FD+ GK R ++ L +V+D + + E
Sbjct: 160 DTFDVIYGKDRTGREEEELSDEVVADMENENTDE 193
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 442 GKPQGTVARVRIGQPIMSVRSSD 510
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -3
Query: 509 SLERTDIMGCPIRT---RATVPWGFPNAPRIPVWSLSAPAHDNI 387
SLER DI CP+ T A V G PN + V S S +D +
Sbjct: 233 SLERLDITRCPLITDKGLAAVAHGCPNLLSLTVESCSGVGNDGL 276
>10_01_0124 - 1504521-1505303
Length = 260
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 254 EYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRYTLHVIRI 382
++ QL L GRI +KYLV++ +D + +R+T V+ +
Sbjct: 178 QFMQLVKSRLGGGRIFDSKYLVEHDRQDLRNAGLRHTADVLGV 220
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 442 GKPQGTVARVRIGQPIMSVRSSD 510
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +1
Query: 427 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 579
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>06_02_0163 -
12488622-12488717,12488744-12488844,12490765-12490924
Length = 118
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 82 CSPQSDTCPNSCSPGIHYXRAPPP 11
C+P + PN C+ G Y A PP
Sbjct: 6 CAPAIENSPNKCNRGSIYQHAIPP 29
>06_02_0084 - 11547820-11548773
Length = 317
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +1
Query: 391 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWK 519
L G DR Q GMRGA P RVR +P R +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,653,078
Number of Sequences: 37544
Number of extensions: 458775
Number of successful extensions: 1344
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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