Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C03
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         84   1e-16
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          30   1.7  
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_30423| Best HMM Match : Filament (HMM E-Value=3.3)                  28   5.2  
SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)                     27   9.1  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = +1

Query: 427 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 576
           MRGAFGKPQGTVARV IGQ I+S+R+ D  KA  IEALRRAKFKFPGRQK
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
 Frame = +1

Query: 292  PYLLQQVPRKELR*RSVPHPDEIHPSCHPHHK--MLSCAGADRLQTGMR-----GAFGKP 450
            PY L+ +P       +VP P  I P C    K  M +  G        R     G  G+P
Sbjct: 1056 PYWLEVMPLLAQEPLNVP-PVGIFPLCEAAGKWNMANENGKPEAYFSQRTKYGPGVDGRP 1114

Query: 451  QGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKW 597
             G+V  +      +++++  +W   + E++  A + FP       S+ W
Sbjct: 1115 SGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNW 1163


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 95  DQRKECYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSS 274
           D+ ++  R CK K   ++R C+G    + R+     K    D+  +C    SDE      
Sbjct: 437 DEGRDETRMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKD 492

Query: 275 EALEAGRIC 301
           E  +  R+C
Sbjct: 493 EGTDETRMC 501


>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = -3

Query: 140 DTVYSYNIDNILSAGRRPIVFSTKRHLSEFLQPGDPL 30
           DT+ S NI    S G    + ST+    EFLQPGDPL
Sbjct: 6   DTLISANIHLCGSFGDHSYL-STRVDRIEFLQPGDPL 41


>SB_30423| Best HMM Match : Filament (HMM E-Value=3.3)
          Length = 355

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 530 MTCAFQRSLERTDIMGCPIRTRATVPWGFPN 438
           M C+ + SL   D  GC  +TR+ VP G+P+
Sbjct: 36  MPCSRRSSLSTLD-RGCSDKTRSPVPQGYPD 65


>SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 445  SRTHHASQSG-AYQLQRTTTFYDADDMKGVSHPD 347
            SR +   +SG A    R  + Y+ D  KGV+HP+
Sbjct: 939  SRNYEVYESGSALPSSREYSLYEQDRQKGVAHPE 972


>SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)
          Length = 592

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = -1

Query: 97  VGAPLCS--PQSDTCPNSCSPGIHYXRAPPPRGA 2
           VG P+ S  P     PN+  P  H  + PPP  A
Sbjct: 62  VGPPVASTPPAPQPVPNNMGPPPHVNQGPPPNSA 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,087,712
Number of Sequences: 59808
Number of extensions: 512622
Number of successful extensions: 1753
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1751
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)