Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C03
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   157   4e-39
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF125451-4|AAD12823.1|  157|Caenorhabditis elegans Hypothetical ...    28   4.6  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   4.6  
U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical p...    28   6.1  
M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  157 bits (382), Expect = 4e-39
 Identities = 71/94 (75%), Positives = 78/94 (82%), Gaps = 1/94 (1%)
 Frame = +2

Query: 110 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 289
           CYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E LSSEALEA
Sbjct: 8   CYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEA 67

Query: 290 GRICCNKYLVKNCGKDQFHIRMR-YTLHVIRIIK 388
            RIC NKY+VKNCGKD FH+R+R +  HV RI K
Sbjct: 68  ARICANKYMVKNCGKDGFHLRVRKHPFHVTRINK 101



 Score =  112 bits (269), Expect = 2e-25
 Identities = 56/86 (65%), Positives = 63/86 (73%), Gaps = 5/86 (5%)
 Frame = +1

Query: 373 HPHH-----KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 537
           HP H     KMLSCAGADRLQTGMRGA+GKPQG VARV IG  + S+R  +      IEA
Sbjct: 92  HPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEA 151

Query: 538 LRRAKFKFPGRQKIYVSKKWGFTKYE 615
            RRAKFKFPGRQ I  S+KWGFTK++
Sbjct: 152 FRRAKFKFPGRQIIVSSRKWGFTKWD 177


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 449 GFPNAPRIPVWSLSAPA 399
           GFPN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 430 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 576
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>AF125451-4|AAD12823.1|  157|Caenorhabditis elegans Hypothetical
           protein Y37E11B.3 protein.
          Length = 157

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 21/97 (21%), Positives = 40/97 (41%)
 Frame = +2

Query: 77  RTQWGADQRKECYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDE 256
           +T +  D  +E  R       PK     G+PDPKI +      +  V++    +  +   
Sbjct: 22  QTSFVVDDLEERIRESARISSPKRAAAAGLPDPKILVDLETHTKEIVNNMDTMLRDMRGS 81

Query: 257 YEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRYTL 367
              +S   LE+ + C N  + K C +   +++  Y +
Sbjct: 82  LHGMSDLTLESLQ-CYNSGVEKACDEADANVKSTYAM 117


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 149 RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 295
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical
           protein F41G3.3 protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 337 SVPHPDEIHPSCHPHH 384
           +VPH    HP  HPHH
Sbjct: 79  TVPHHHHPHPHAHPHH 94


>M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical
           protein B0303.11 protein.
          Length = 903

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = -2

Query: 591 LRYIDLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPSLEP 412
           +R + LL+T ++ +S   S + LC+PT         L N +     L  PE  + P+L  
Sbjct: 344 IRCLLLLSTVQILVSAIGSYDILCIPTTVFYLFAYALFNFYVFLVKLSDPEIPSPPTLLS 403

Query: 411 ISSSA 397
           ++ SA
Sbjct: 404 LAISA 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,885,971
Number of Sequences: 27780
Number of extensions: 368391
Number of successful extensions: 998
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)