Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C03
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   1.8  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   5.5  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   5.5  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.2  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 290 LLPAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLG 171
           L+  P  + +  H  + A  V  + LSLS  P   +GS G
Sbjct: 2   LVARPMQALSIRHAVILASFVWIYALSLSLPPLFGWGSYG 41


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 162 VCLTQRSVFSTWAKRERQWMTSH 230
           +CLT+R +   +  R  +W   H
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKEH 67


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 83  QWGADQRKECYRYC 124
           QW   ++ +CY YC
Sbjct: 62  QWPETRQLKCYMYC 75


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +3

Query: 450 PRHSSACAYWTAHYVCTL 503
           P+  +   YW+ +++CT+
Sbjct: 31  PKDHNGSIYWSMYHLCTV 48


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 87  HCVLHKATPVRIPAARGSTI 28
           HC +H  TPV +   +G  I
Sbjct: 828 HCEVHGDTPVTVTWLKGGKI 847


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 87  HCVLHKATPVRIPAARGSTI 28
           HC +H  TPV +   +G  I
Sbjct: 824 HCEVHGDTPVTVTWLKGGKI 843


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/28 (28%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 131 YSYNI-DNILSAGRRPIVFSTKRHLSEF 51
           +++N+ D +L   + PI+ + + HL+E+
Sbjct: 163 WTHNVLDMVLYWDQEPIILADELHLTEY 190


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 10  AVAALXNSGSPG-CRNSDRCRFVENTMGRRPAERMLSI 120
           AV AL +S  P  C      R+V+N +G    ER+L +
Sbjct: 607 AVFALGSSAYPNFCAFG---RYVDNLLGELGGERLLKL 641


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,863
Number of Sequences: 438
Number of extensions: 4414
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)