Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C03
(616 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 144 3e-35
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 144 3e-35
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 144 4e-35
At5g23575.1 68418.m02766 transmembrane protein, putative similar... 29 2.4
At4g14160.3 68417.m02185 transport protein, putative similar to ... 29 2.4
At4g14160.2 68417.m02186 transport protein, putative similar to ... 29 2.4
At4g14160.1 68417.m02184 transport protein, putative similar to ... 29 2.4
At5g13020.1 68418.m01492 emsy N terminus domain-containing prote... 29 3.2
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 4.3
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to... 28 4.3
At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to... 28 4.3
At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to... 28 4.3
At5g25370.1 68418.m03009 phospholipase D, putative (PLDZETA) ide... 27 9.9
At5g18780.1 68418.m02231 F-box family protein contains F-box dom... 27 9.9
At5g11990.1 68418.m01402 proline-rich family protein contains pr... 27 9.9
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 9.9
At3g19300.1 68416.m02448 protein kinase family protein contains ... 27 9.9
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 144 bits (350), Expect = 3e-35
Identities = 65/94 (69%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
Frame = +2
Query: 110 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 289
CYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA
Sbjct: 8 CYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEA 67
Query: 290 GRICCNKYLVKNCGKDQFHIRMR-YTLHVIRIIK 388
RI CNKY+VK+ GKD FH+R+R + HV+RI K
Sbjct: 68 ARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINK 101
Score = 120 bits (290), Expect = 6e-28
Identities = 60/85 (70%), Positives = 64/85 (75%), Gaps = 5/85 (5%)
Frame = +1
Query: 373 HPHH-----KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 537
HP H KMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D EA
Sbjct: 92 HPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEA 151
Query: 538 LRRAKFKFPGRQKIYVSKKWGFTKY 612
LRRAKFKFPGRQKI VS+KWGFTK+
Sbjct: 152 LRRAKFKFPGRQKIIVSRKWGFTKF 176
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 144 bits (350), Expect = 3e-35
Identities = 65/94 (69%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
Frame = +2
Query: 110 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 289
CYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA
Sbjct: 8 CYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEA 67
Query: 290 GRICCNKYLVKNCGKDQFHIRMR-YTLHVIRIIK 388
RI CNKY+VK+ GKD FH+R+R + HV+RI K
Sbjct: 68 ARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINK 101
Score = 119 bits (287), Expect = 1e-27
Identities = 60/85 (70%), Positives = 64/85 (75%), Gaps = 5/85 (5%)
Frame = +1
Query: 373 HPHH-----KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 537
HP H KMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D EA
Sbjct: 92 HPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEA 151
Query: 538 LRRAKFKFPGRQKIYVSKKWGFTKY 612
LRRAKFKFPGRQKI VS+KWGFTK+
Sbjct: 152 LRRAKFKFPGRQKIIVSRKWGFTKF 176
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 144 bits (349), Expect = 4e-35
Identities = 65/94 (69%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
Frame = +2
Query: 110 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 289
CYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA
Sbjct: 8 CYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEA 67
Query: 290 GRICCNKYLVKNCGKDQFHIRMR-YTLHVIRIIK 388
RI CNKY+VK+ GKD FH+R+R + HV+RI K
Sbjct: 68 ARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINK 101
Score = 119 bits (287), Expect = 1e-27
Identities = 60/85 (70%), Positives = 64/85 (75%), Gaps = 5/85 (5%)
Frame = +1
Query: 373 HPHH-----KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 537
HP H KMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D EA
Sbjct: 92 HPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEA 151
Query: 538 LRRAKFKFPGRQKIYVSKKWGFTKY 612
LRRAKFKFPGRQKI VS+KWGFTK+
Sbjct: 152 LRRAKFKFPGRQKIIVSRKWGFTKF 176
>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
cleft lip and palate transmembrane protein 1 [Homo
sapiens] GI:4039014; contains Pfam profile PF05602:
Cleft lip and palate transmembrane protein 1 (CLPTM1)
Length = 593
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 495 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQH 388
++NG H + GFP T P +P++S +R H
Sbjct: 127 QNNGSLYAHIFFARSGFPIDPTDPEYQPLNSFSRTH 162
>At4g14160.3 68417.m02185 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 620
Score = 29.1 bits (62), Expect = 2.4
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = +2
Query: 161 GVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQ 340
GV + K+ + G + F V D ++++ + + +C N L NC KD
Sbjct: 366 GVAEMKVAVESTGGLVVLSESFGHSVF--KDSFKRMFEDGEHSLGLCFNGTLEINCSKD- 422
Query: 341 FHIRMRYTLHVIRIIKCCRALELIGSRLG-CVVRSGNPKAQ*RVCVLDSPLCL 496
+ + +I C +LE G + V+ GN A ++C LD CL
Sbjct: 423 --------IKIQGVIGPCSSLEKKGPNVADTVIGEGNTSAW-KLCGLDKSTCL 466
>At4g14160.2 68417.m02186 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 772
Score = 29.1 bits (62), Expect = 2.4
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = +2
Query: 161 GVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQ 340
GV + K+ + G + F V D ++++ + + +C N L NC KD
Sbjct: 366 GVAEMKVAVESTGGLVVLSESFGHSVF--KDSFKRMFEDGEHSLGLCFNGTLEINCSKD- 422
Query: 341 FHIRMRYTLHVIRIIKCCRALELIGSRLG-CVVRSGNPKAQ*RVCVLDSPLCL 496
+ + +I C +LE G + V+ GN A ++C LD CL
Sbjct: 423 --------IKIQGVIGPCSSLEKKGPNVADTVIGEGNTSAW-KLCGLDKSTCL 466
>At4g14160.1 68417.m02184 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 621
Score = 29.1 bits (62), Expect = 2.4
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = +2
Query: 161 GVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQ 340
GV + K+ + G + F V D ++++ + + +C N L NC KD
Sbjct: 366 GVAEMKVAVESTGGLVVLSESFGHSVF--KDSFKRMFEDGEHSLGLCFNGTLEINCSKD- 422
Query: 341 FHIRMRYTLHVIRIIKCCRALELIGSRLG-CVVRSGNPKAQ*RVCVLDSPLCL 496
+ + +I C +LE G + V+ GN A ++C LD CL
Sbjct: 423 --------IKIQGVIGPCSSLEKKGPNVADTVIGEGNTSAW-KLCGLDKSTCL 466
>At5g13020.1 68418.m01492 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 397
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -2
Query: 558 LELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQ 391
L+ S Q ++D P V+ + + S + A+G P + HPS++P SS+ R+
Sbjct: 123 LQSSVPQLVHDAPSPAVSGSRKKQKTSQSIASL-AMGPPSPSLHPSMQPSSSALRR 177
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 248 SDEYEQLSSEALEAGRICCNKYLV 319
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -3
Query: 212 SLSFCPSRKYGSLGQAH 162
SLSFCPS Y S G+ H
Sbjct: 327 SLSFCPSNIYSSTGRVH 343
>At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 359 ISSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 219
I GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 47 ICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 189
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 359 ISSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 219
I GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 52 ICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 102
>At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 359 ISSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 219
I GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 47 ICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At5g25370.1 68418.m03009 phospholipase D, putative (PLDZETA)
identical to phospholipase D zeta SP:P58766 from
[Arabidopsis thaliana]; similar to phospholipase D
[Lycopersicon esculentum] GI:12060550; contains Pfam
profile PF00614: Phospholipase D. Active site motif
Length = 820
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +3
Query: 36 IPGLQEFGQVSLCGEHNGAPTSGKNVIDIVRINRILNLGFVG-----VCLTQRSVFSTWA 200
I L + + +LCG+ N PT K I R+ F G + L + V T
Sbjct: 18 IDKLHQRSRFNLCGKGNKEPTGKKTQSQIKRLTDSCTSLFGGHLYATIDLDRSRVARTMM 77
Query: 201 KRERQWMTSHYACT 242
+R +W+ S + T
Sbjct: 78 RRHPKWLQSFHVYT 91
>At5g18780.1 68418.m02231 F-box family protein contains F-box domain
Pfam:PF00646
Length = 441
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -1
Query: 169 RHTPTKPRFRIRFILTISITFFPLVGAPLCSPQSDTCPN 53
RH KPRF+ + + T F + +TCPN
Sbjct: 303 RHLELKPRFKFHDLARLRATMFSNSSPEMLPVILETCPN 341
>At5g11990.1 68418.m01402 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 181
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 88 PLCSPQSDTCPNSCSP 41
PLC + TCP CSP
Sbjct: 29 PLCISECSTCPTICSP 44
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 200 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 331
KK + PL + +++ EYE GR CCN ++CG
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCG 292
>At3g19300.1 68416.m02448 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 663
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 555 ELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALG 448
+L T L ++C+ T++ G+ T +C LG
Sbjct: 76 DLGVTSDLTEICITTISRTMELYGIPRNATIFCGLG 111
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,024,238
Number of Sequences: 28952
Number of extensions: 338458
Number of successful extensions: 943
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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