Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C02
(469 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.066
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 31 0.066
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.27
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.47
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 0.82
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.1
SPAC664.08c |||traub transciption factor family protein |Schizos... 27 1.1
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 1.1
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 27 1.4
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 27 1.4
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 27 1.4
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 1.9
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 2.5
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 4.4
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 5.8
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 5.8
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.6
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.5 bits (68), Expect = 0.066
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Frame = +2
Query: 14 SDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSD-HSGVNSSERYIVDNQSGHNKNSATYI 190
S + +S ++ S++++ + S + + R SS HS SS + S +K+S+ +
Sbjct: 365 SSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHK-----SSSSSKSSSAPV 419
Query: 191 TKGIHVEDNISKSTQHVTNKSLSDSVTK------TSIEFQRAMHGGDDSTTNVDRSTRGG 352
+ + S+S+ H ++ SLS +K +S + H + ST V T
Sbjct: 420 SSAFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYERSTVYV--VTVET 477
Query: 353 HHKRTSDLISDASSTNSVLHRKGLSSNTEAHHSIST 460
+S S ++ T+ +L G SS+T++ + ST
Sbjct: 478 VSSGSSTYASQSTQTSILLVIVGDSSSTDSSGASST 513
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 31.5 bits (68), Expect = 0.066
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Frame = +2
Query: 221 SKSTQHVTNKSLSDSVTKTS-----IEFQRAMHG-GDDSTTNVDRSTRGGHHKRTSDLIS 382
SKS +V+NK L D + +++ ++ +H D++ +R ++ H T DLIS
Sbjct: 117 SKSLSNVSNKPLGDQLFRSNSLMSPSLLKKELHRIQSDASQANERESQAPHSFVTHDLIS 176
Query: 383 DASSTNSVLHRKGLSSNTE 439
+ NS+ H S TE
Sbjct: 177 SSKDGNSLTHEFANDSVTE 195
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.27
Identities = 19/85 (22%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +2
Query: 221 SKSTQHVTNKSLSDSV-TKTSIEFQRAMHGGDDSTTNVDRSTRGG-HHKRTSDLISDASS 394
S ++ T+ S++ + +TS+ ++ +++T+ +S++ G HH ++ +D+SS
Sbjct: 1261 SNASPSPTSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHHHHHNEGHADSSS 1320
Query: 395 TNSVLHRKGLSSNTEAHHSISTTAA 469
T + L + + H S S++ A
Sbjct: 1321 TRTSLAHQDSRKSLHRHLSRSSSRA 1345
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.7 bits (61), Expect = 0.47
Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Frame = +2
Query: 104 SSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEDNISKSTQHVTNKSLSD----SVT 271
SSD S +SSE + + +S+ ++ + + S S+ ++S S+ S +
Sbjct: 108 SSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSS 167
Query: 272 KTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRTSDLISDASSTNSVLHRKGLSSNTEAHHS 451
+S E + + D S+++ D + SD S +S + S +G S++ + S
Sbjct: 168 SSSSESESSSEDNDSSSSSSDSESESS--SEDSDSSSSSSDSESESSSEGSDSSSSSSSS 225
Query: 452 ISTTAA 469
S +++
Sbjct: 226 ESESSS 231
Score = 28.7 bits (61), Expect = 0.47
Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 5/153 (3%)
Frame = +2
Query: 14 SDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYIT 193
SD+ +S S N+ S + ++ S +SS+ + G + +S++ +
Sbjct: 112 SDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSS 171
Query: 194 KG-IHVEDNISKST----QHVTNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHH 358
+ EDN S S+ + ++ SDS + +S + G DS+++ S
Sbjct: 172 ESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSS-----E 226
Query: 359 KRTSDLISDASSTNSVLHRKGLSSNTEAHHSIS 457
+S +D+SS++S + S ++++ S S
Sbjct: 227 SESSSEDNDSSSSSSDSESESSSEDSDSSSSSS 259
Score = 26.6 bits (56), Expect = 1.9
Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 2/133 (1%)
Frame = +2
Query: 5 EARSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSAT 184
E+ S++ +S + + + K S + + S D S +SS+ + + S++
Sbjct: 246 ESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSS 305
Query: 185 YITKGIHVEDNISKSTQHVTNKSLS--DSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHH 358
+ ++ + +T T+ +S S TS E ++ +DS+ D+S + H
Sbjct: 306 SDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKD-EDSSKIHDKSLKRKHE 364
Query: 359 KRTSDLISDASST 397
S + +S T
Sbjct: 365 DDESSTSTKSSRT 377
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.9 bits (59), Expect = 0.82
Identities = 31/147 (21%), Positives = 64/147 (43%)
Frame = +2
Query: 29 SRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHV 208
S IT HS+ + + S V SS +SS + S S+T ++ ++
Sbjct: 714 SNIT-HSSLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIVSSTTVS---NI 769
Query: 209 EDNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRTSDLISDA 388
N+ +T ++ + S TS+ + +++ + +T H T + +
Sbjct: 770 SSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTSSTNEYNT--SFHAPTVSSTTSS 827
Query: 389 SSTNSVLHRKGLSSNTEAHHSISTTAA 469
SST S+ KG++SN+ ++ +T++
Sbjct: 828 SSTTSLAANKGVNSNSITSLNLESTSS 854
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.1
Identities = 25/141 (17%), Positives = 55/141 (39%)
Frame = +2
Query: 47 STSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEDNISK 226
S++ + + S T + + SS + + + I + + +++ + +
Sbjct: 112 SSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSAT 171
Query: 227 STQHVTNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRTSDLISDASSTNSV 406
T T+ SLS + S +STT+ ++ S+ + +S +S
Sbjct: 172 PTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSS 231
Query: 407 LHRKGLSSNTEAHHSISTTAA 469
L+ +S T SIS+T +
Sbjct: 232 LN--STTSATATSSSISSTVS 250
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.5 bits (58), Expect = 1.1
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +2
Query: 8 ARSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATY 187
A+S +++S + T + I SG+ + S+ S +NSS + + S + S++Y
Sbjct: 559 AQSSSLSSSNSSALTHISSSIVSSGSSSALSSSTIVSSINSSSSVFISSVSSSLQYSSSY 618
Query: 188 ITK 196
+T+
Sbjct: 619 VTE 621
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 1.1
Identities = 21/93 (22%), Positives = 40/93 (43%)
Frame = +2
Query: 8 ARSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATY 187
+R + +NS +S+ + + S VS DH +SSE + ++ + S+
Sbjct: 75 SRQELLNSGSLNSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSISEENEDDDQSSAI 134
Query: 188 ITKGIHVEDNISKSTQHVTNKSLSDSVTKTSIE 286
K + D + K K LSD + +++E
Sbjct: 135 PEKDM---DRLKKIIN--GEKKLSDQIRTSALE 162
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.5 bits (58), Expect = 1.1
Identities = 21/95 (22%), Positives = 45/95 (47%)
Frame = +2
Query: 149 DNQSGHNKNSATYITKGIHVEDNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDDSTTN 328
+N S + +S ++ +++ + SK V+ +S++ S +F + G +
Sbjct: 114 NNSSRRSSSSVGKLSNVSNMQSSPSKDP-FVSQDYEKESIS--SSQFSKKYSEGSLKSQQ 170
Query: 329 VDRSTRGGHHKRTSDLISDASSTNSVLHRKGLSSN 433
+ + H K+ +D S+ASS++SV+ L N
Sbjct: 171 SNTRSNSVHEKQNTDHASNASSSSSVVSSPSLKPN 205
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 1.4
Identities = 37/148 (25%), Positives = 54/148 (36%), Gaps = 4/148 (2%)
Frame = +2
Query: 14 SDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYIT 193
S N+++ + SNN I T S + + + I +S S +
Sbjct: 112 SQNISAAPMANIISNNDKILPMTTMASATASEEKNRIKDEALVIKKEESNVAIPSEVTVA 171
Query: 194 KGIH---VEDNISKSTQHVTNK-SLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHK 361
ED S ++ K S+ D T IE A TN + R H K
Sbjct: 172 ANAFSASTEDVYSIVGDSLSKKASVKDFSDVTGIETIPAYV----EATNGSSTVRSPHAK 227
Query: 362 RTSDLISDASSTNSVLHRKGLSSNTEAH 445
R+ IS SST+ K LSS++ H
Sbjct: 228 RSLSSISVKSSTSPFSGSKFLSSSSYPH 255
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 27.1 bits (57), Expect = 1.4
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Frame = +2
Query: 47 STSNNQDIKQSGTHTQRVVSSDHSGVNS---SERYIVDNQSGHNKNSATYITKGIHVEDN 217
+T N D H R SS HS NS ++ V + + K A H ++
Sbjct: 14 NTLGNNDENHPSNHIARAKSSLHSSENSLVNGKKATVSSTNVPKKRHALDDVSNFHNKEG 73
Query: 218 ISKSTQHVTNKSLSDSV-TKTSIEFQRAMHGGDDSTTNVDR 337
+ ++++ + + SV T+ ++E + + DD + R
Sbjct: 74 VPLASKNTNVRHTTASVSTRRALEEKSIIPATDDEPASKKR 114
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 27.1 bits (57), Expect = 1.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 435 VFELRPLRCKTELVEEASEIRSDVRLWWPP 346
VF + L+ TE + +R D R WW P
Sbjct: 550 VFGEKRLQALTEKFKNGQLVRRDYRYWWTP 579
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 361 AYIGSNFRCFLY*FSFTSQRSQFEHRSSPFH*HNS 465
++I + F++ FS T SQF P+H H++
Sbjct: 34 SFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHT 68
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 221 SKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDDSTTNV--DRSTRGGHHKRTSDLISDASS 394
S++ + +KSL S + S+E DDS+++V ++ T H R +I +S
Sbjct: 284 SETIDGIDDKSLRSSTREVSVESPNEDSVNDDSSSDVSDEKETEAKHEIRAPAIIVRETS 343
Query: 395 TN 400
++
Sbjct: 344 SH 345
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 113 HSGVNSSERYIVDNQSGHNKNSATYITKGIHVEDN-ISKSTQH 238
HSG + ER + ++ GH + +I +H++D+ I T+H
Sbjct: 799 HSGFSVGERVFISDEHGHWSLAKGHI---VHIQDSCIEVRTRH 838
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 5.8
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 338 STRGGHHKRTSDLISDASSTNSVLHRKGLSSNT 436
ST K+ D AS T+ LHR+ LSSNT
Sbjct: 91 STSNTPTKKKKDSFDHASVTS--LHRRSLSSNT 121
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.0 bits (52), Expect = 5.8
Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Frame = +2
Query: 122 VNSSERYIVDNQSGHNKNSATYITKGIHVEDNISKSTQHVTNKSLSDSVTKTSIEFQRAM 301
+N+ Y VDN + H++ + GI+V +++ S+ ++ + S ++ A
Sbjct: 82 INTIRVYQVDNSANHDECMSALQDAGIYVILDLATSSNSISRLDAASSYNAVFLQGIFAT 141
Query: 302 HGGDDSTTNVDRSTRGGHHKRTSDLISDASSTNSVLH--RKGLSSNTEAHHSISTTAA 469
+ TNV G T++ + + + L ++ +S N++ + +AA
Sbjct: 142 IDAFKNYTNVLGFFAGNEVANTAENSATTTWVKAALRDAKEYISKNSDRDIPVGYSAA 199
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 7.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 154 PKWA*QKFCDIYNKRNPRRRQYFEIYST 237
PKWA + NK + QYF+I S+
Sbjct: 245 PKWASPELRSEENKAHKHMEQYFDINSS 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,636
Number of Sequences: 5004
Number of extensions: 40130
Number of successful extensions: 169
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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