Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C02
(469 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80215-9|CAB02276.1| 327|Caenorhabditis elegans Hypothetical pr... 30 0.72
AY204188-1|AAO39192.1| 364|Caenorhabditis elegans nuclear recep... 30 0.72
AF100669-6|AAM97937.1| 242|Caenorhabditis elegans Nuclear hormo... 30 0.72
AF100669-5|AAU05545.1| 364|Caenorhabditis elegans Nuclear hormo... 30 0.72
AF100669-4|AAM97936.1| 395|Caenorhabditis elegans Nuclear hormo... 30 0.72
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 29 2.2
AF003134-2|AAB54141.5| 691|Caenorhabditis elegans Hypothetical ... 29 2.2
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 28 2.9
Z49071-1|CAA88873.2| 269|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z81470-3|CAB03880.1| 401|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z81109-3|CAB03246.1| 318|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z78413-8|CAB01665.2| 541|Caenorhabditis elegans Hypothetical pr... 27 5.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z81554-2|CAB04504.1| 259|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z68160-2|CAA92290.2| 403|Caenorhabditis elegans Hypothetical pr... 27 8.9
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 27 8.9
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 27 8.9
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 27 8.9
>Z80215-9|CAB02276.1| 327|Caenorhabditis elegans Hypothetical
protein C36B1.11 protein.
Length = 327
Score = 30.3 bits (65), Expect = 0.72
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 314 DSTTNVDRSTRGGHHKRTSDLISDASSTNSVLHRKGLSSNTEAHHSISTT 463
D+ ++R + G + D +SD S R +SS + HS STT
Sbjct: 179 DANATIERDSENGSPQSDDDHLSDVSHECQGSSRSSISSKKSSIHSTSTT 228
>AY204188-1|AAO39192.1| 364|Caenorhabditis elegans nuclear receptor
NHR-104 protein.
Length = 364
Score = 30.3 bits (65), Expect = 0.72
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 121 CKFQRKIYCG*PKWA*QKFCDIYNKRNPRRR 213
C+F++ + G K + QK DIY +RNP R
Sbjct: 61 CRFEKCLKVGMKKESIQKHRDIYGRRNPENR 91
>AF100669-6|AAM97937.1| 242|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 104, isoform b protein.
Length = 242
Score = 30.3 bits (65), Expect = 0.72
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 121 CKFQRKIYCG*PKWA*QKFCDIYNKRNPRRR 213
C+F++ + G K + QK DIY +RNP R
Sbjct: 61 CRFEKCLKVGMKKESIQKHRDIYGRRNPENR 91
>AF100669-5|AAU05545.1| 364|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 104, isoform c protein.
Length = 364
Score = 30.3 bits (65), Expect = 0.72
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 121 CKFQRKIYCG*PKWA*QKFCDIYNKRNPRRR 213
C+F++ + G K + QK DIY +RNP R
Sbjct: 61 CRFEKCLKVGMKKESIQKHRDIYGRRNPENR 91
>AF100669-4|AAM97936.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 104, isoform a protein.
Length = 395
Score = 30.3 bits (65), Expect = 0.72
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 121 CKFQRKIYCG*PKWA*QKFCDIYNKRNPRRR 213
C+F++ + G K + QK DIY +RNP R
Sbjct: 61 CRFEKCLKVGMKKESIQKHRDIYGRRNPENR 91
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 28.7 bits (61), Expect = 2.2
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 242 TNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRTSD-LISDASSTNSVLHRK 418
++ S S S TS A DDS+++ S+ +SD +D+SST S
Sbjct: 43 SDSSSSSSTASTSSSSSTAATSSDDSSSSSSSSSSSASSTSSSDTTTADSSSTTS----- 97
Query: 419 GLSSNTEAHHSISTTAA 469
SS T ++ S ST+++
Sbjct: 98 SDSSTTSSNSSSSTSSS 114
Score = 28.3 bits (60), Expect = 2.9
Identities = 26/105 (24%), Positives = 46/105 (43%)
Frame = +2
Query: 89 TQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEDNISKSTQHVTNKSLSDSV 268
TQ S+ +SS+ + + + +S+T T + S S+ ++ S SD+
Sbjct: 29 TQYCASTCSLCSDSSDSSSSSSTASTSSSSSTAATSSDDSSSSSSSSSSSASSTSSSDTT 88
Query: 269 TKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRTSDLISDASSTNS 403
T S + D STT+ + S+ TS + S +SST +
Sbjct: 89 TADS----SSTTSSDSSTTSSNSSSSTSSSDSTSVVSSTSSSTTT 129
>AF003134-2|AAB54141.5| 691|Caenorhabditis elegans Hypothetical
protein ZC581.3 protein.
Length = 691
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 242 TNKSLSDSVTKTSIEFQRAMHGGDDS---TTNVDRSTRGGHHKRTSDLISDASSTNSVLH 412
T S+ + TS E + G DD N+D + + ++ LIS ++STNS+ H
Sbjct: 324 TQNSILELDHVTSPETSTSESGNDDLDAIVNNLDEDKQDQGRQESTQLISPSTSTNSLTH 383
Query: 413 RKGLSSNTEAHHS 451
+ H++
Sbjct: 384 LNDKTEEDVDHNA 396
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 28.3 bits (60), Expect = 2.9
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +2
Query: 38 TQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEDN 217
T+ +K+S TH++ + H+ V + I DN GH+ ++ + + IH
Sbjct: 1275 TREWDEGEHHVKESTTHSEHTDGNTHTSVQETITTITDN--GHDADNISTDSLVIHEPAA 1332
Query: 218 ISKSTQ-----HVTNKSLSDSVTK 274
++ TQ H N D VT+
Sbjct: 1333 DNQMTQSIYQPHSDNDDDDDKVTE 1356
>Z49071-1|CAA88873.2| 269|Caenorhabditis elegans Hypothetical
protein T22C8.1 protein.
Length = 269
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 359 KRTSDLISDASSTNSVLHRKGLSSNTE 439
K S +SD SSTN V R+ + +NT+
Sbjct: 220 KNISSFLSDTSSTNKVPDRRRIQANTK 246
>Z81470-3|CAB03880.1| 401|Caenorhabditis elegans Hypothetical
protein C14A6.3 protein.
Length = 401
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -1
Query: 313 ITTMHSSLKLNTCFCNTITKTLIG-NMLSRFRNIVFYVDSFCYICRRIFVMPTLVIHNIS 137
I +++S K+ C CN+I + + + R+I D + + + ++ N +
Sbjct: 236 IDSINSIEKITLC-CNSIPEITVNLTSILELRDIASDTDKLFVLLKTNSIQLLNMLSNAT 294
Query: 136 FAGIYTRVIGGNNPLGM 86
G Y +IG NP M
Sbjct: 295 IQGFYEEIIGIINPEDM 311
>Z81109-3|CAB03246.1| 318|Caenorhabditis elegans Hypothetical
protein R10D12.5 protein.
Length = 318
Score = 27.5 bits (58), Expect = 5.1
Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = -1
Query: 259 TKTLIGNMLSRFRNIVFYVDSFCYICRRIFVMPTLVIHNISFAGIYTRVIGGNNPLGM-- 86
T L+G + N+ F + F + + ++ +++H+ F Y+ ++ P
Sbjct: 11 TDGLVGPFPCKHMNLCFIIAFFVFATTMLHLLLLIIMHSKVFCNSYSMIVTYGRPTNFSS 70
Query: 85 ----SA*LFNVLVIRCRMLSNSRINVI 17
SA +N V++C +SN+ + ++
Sbjct: 71 SIPNSAPTWNDCVVQC-YISNTCVVIV 96
>Z78413-8|CAB01665.2| 541|Caenorhabditis elegans Hypothetical
protein T01C3.8 protein.
Length = 541
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 370 RCTLMVASTRRSVDISRGIITTMHS--SLKLNTCFCNTITKTLIGNMLSRFRNIVFYVDS 197
RC ++ +RS + RG++ S S + NT N T L ++ R+ VF + S
Sbjct: 136 RCIIITTDGKRSKSVMRGLLNKRRSSNSTRPNTHITNLDTTELSNEFMTSNRSRVF-IGS 194
Query: 196 F 194
F
Sbjct: 195 F 195
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 27.1 bits (57), Expect = 6.7
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Frame = +2
Query: 104 SSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHV-EDNISKSTQHVTNKSLSDSVTKTS 280
SS G + + V +Q+ + T T+ + IS STQH T S T S
Sbjct: 1400 SSTSEGSSKASSSPVPSQTSSTPTNPTGSTESSTLLSSTISGSTQHTTMSKASSGSTSPS 1459
Query: 281 IEFQ--RAMHGGDDSTTNVDRSTRGGHHKRTSDLISDASSTNSVL 409
Q + G ST+ V S+ + S S SS S +
Sbjct: 1460 TNSQTGSTVTMGSSSTSGVSTSSASSTQPQMS--TSQGSSAGSTV 1502
>Z81554-2|CAB04504.1| 259|Caenorhabditis elegans Hypothetical
protein F57G4.5 protein.
Length = 259
Score = 26.6 bits (56), Expect = 8.9
Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Frame = +2
Query: 14 SDNVNSRITQHSTSN----NQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSA 181
S ++N IT S S+ ++ I+++ + S+ +S N S + ++++
Sbjct: 42 SSHINDAITSSSDSDEDYVSRRIRKARQKSHYFNSNQYSAENLSSSARKSAKLPNSRSMQ 101
Query: 182 TYITKGIHVEDNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHK 361
Y+ + + S S+ TNK DS + + ++ DDS + D H K
Sbjct: 102 DYMCRADSESISTSSSSALQTNKFPEDSSHRKDYSLPKNLYNQDDSLLH-DFEYPERHKK 160
Query: 362 RTSDLISDASST 397
TS D+ ++
Sbjct: 161 VTSTRRIDSENS 172
>Z68160-2|CAA92290.2| 403|Caenorhabditis elegans Hypothetical
protein D1046.2 protein.
Length = 403
Score = 26.6 bits (56), Expect = 8.9
Identities = 27/90 (30%), Positives = 37/90 (41%)
Frame = +2
Query: 128 SSERYIVDNQSGHNKNSATYITKGIHVEDNISKSTQHVTNKSLSDSVTKTSIEFQRAMHG 307
SS IV G +KN TY+ IHV+ T+H +DS + FQ G
Sbjct: 158 SSVSNIVCPSYGCDKNVPTYLDLAIHVD------TEHRDLSRATDSFRIRRVTFQDKA-G 210
Query: 308 GDDSTTNVDRSTRGGHHKRTSDLISDASST 397
+++ST RTS +S A T
Sbjct: 211 FMKWKKQMEKSTNSEFFLRTSQKVSFAIRT 240
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 20 NVNSRITQHSTSN-NQDIKQSGTHTQRVVSSDHSGVNSSER 139
N N QH N NQ+ Q+ Q V ++H G N+ ++
Sbjct: 200 NQNQNSNQHPNQNHNQNQMQNPHQNQNHVQNNHQGANNHQQ 240
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 20 NVNSRITQHSTSN-NQDIKQSGTHTQRVVSSDHSGVNSSER 139
N N QH N NQ+ Q+ Q V ++H G N+ ++
Sbjct: 200 NQNQNSNQHPNQNHNQNQMQNPHQNQNHVQNNHQGANNHQQ 240
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 20 NVNSRITQHSTSN-NQDIKQSGTHTQRVVSSDHSGVNSSER 139
N N QH N NQ+ Q+ Q V ++H G N+ ++
Sbjct: 200 NQNQNSNQHPNQNHNQNQMQNPHQNQNHVQNNHQGANNHQQ 240
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,702,858
Number of Sequences: 27780
Number of extensions: 221277
Number of successful extensions: 745
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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