Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C02
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   0.71 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   0.94 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.94 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.94 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.7  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 151 IHNISFAGIYTRVIG 107
           +H++ F G YT VIG
Sbjct: 370 VHDVEFPGXYTMVIG 384


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 213 SSTWIPFVIYVAEFLLCPLWLS 148
           S+TW  F +++   L C +WL+
Sbjct: 122 SATWEVFKVWIFGDLWCSIWLA 143


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 20  NVNSRITQHSTSNNQD-IKQSGTHTQRVVSSDHSGVNSSE 136
           N N  ++ +S S++++ +KQ   + +  +SS  S ++SSE
Sbjct: 343 NSNQIVSDNSLSSSEEKLKQDILNLRTDISSSSSSISSSE 382


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 211 FYVDSFCYICRRIFVMPTLVIHNISFAGIYTRV 113
           ++ ++FCY  R        V HN+S    + RV
Sbjct: 533 WFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV 565


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 152 NQSGHNKNSATYITKGIHVEDNISKSTQHVTNKSLSDSVTKTSIE 286
           N+S + +NS    T+  + + N  + TQ++   S S+   KT I+
Sbjct: 370 NESENRRNSCLGSTETYYSKHNTQQFTQYIPESS-SNLQEKTKID 413


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 189 IYVAEFLLCPLWLSTIYLSLE 127
           IY  +F+   +W  T+Y+S E
Sbjct: 87  IYGGQFVRDLIWTPTVYVSNE 107


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 401 SVLHRKGLSSNTEAHHSISTTAA 469
           S LH      N + HH+ S+++A
Sbjct: 398 SDLHHPNCKINRKVHHTTSSSSA 420


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/44 (20%), Positives = 19/44 (43%)
 Frame = +2

Query: 110 DHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEDNISKSTQHV 241
           DH+   +  R+ V +   H+K      T     ++  + + QH+
Sbjct: 343 DHAPKQTEVRFKVHDPKAHSKGGTLENTINGRADEEAAPAPQHL 386


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/44 (20%), Positives = 19/44 (43%)
 Frame = +2

Query: 110 DHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEDNISKSTQHV 241
           DH+   +  R+ V +   H+K      T     ++  + + QH+
Sbjct: 343 DHAPKQTEVRFKVHDPKAHSKGGTLENTINGRADEEAAPAPQHL 386


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 92  GYECLTV*CLGY 57
           G +CLTV CL +
Sbjct: 384 GIQCLTVVCLAF 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,460
Number of Sequences: 438
Number of extensions: 2757
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)