Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C02
(469 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2... 31 0.29
At3g60600.1 68416.m06781 vesicle-associated membrane protein, pu... 31 0.39
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 31 0.51
At5g17200.1 68418.m02015 glycoside hydrolase family 28 protein /... 30 0.90
At3g52910.1 68416.m05831 expressed protein nearly identical to t... 29 1.2
At3g49260.2 68416.m05384 calmodulin-binding family protein low s... 28 2.7
At3g49260.1 68416.m05383 calmodulin-binding family protein low s... 28 2.7
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated... 28 3.6
At4g29980.1 68417.m04264 expressed protein 28 3.6
At1g61110.1 68414.m06885 no apical meristem (NAM) family protein... 28 3.6
At5g35230.1 68418.m04177 hypothetical protein 27 4.8
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 27 4.8
At5g67270.1 68418.m08480 microtubule-associated EB1 family prote... 27 6.3
At5g37460.1 68418.m04508 hypothetical protein contains Pfam PF04... 27 6.3
At1g72680.1 68414.m08405 cinnamyl-alcohol dehydrogenase, putativ... 27 6.3
At5g23100.1 68418.m02702 expressed protein contains Pfam profile... 27 8.4
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 27 8.4
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r... 27 8.4
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i... 27 8.4
At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transfera... 27 8.4
At1g22240.1 68414.m02780 pumilio/Puf RNA-binding domain-containi... 27 8.4
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom... 27 8.4
>At4g12770.1 68417.m02004 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 909
Score = 31.5 bits (68), Expect = 0.29
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +2
Query: 56 NNQDIKQSGTHTQRVVSSDHSGVNS---SERYIVDNQS-GHNKNSATYITKGIHVEDNIS 223
N I S H+ V SS + VNS S+ +D+ S G N+ +A ED+
Sbjct: 389 NEPSIPTSAYHSH-VPSSGRASVNSPTASQMDELDDFSIGRNQTAANGYPDPSSGEDSDV 447
Query: 224 KSTQHVTNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGH 355
ST + ++ D++ K +F+ A + + RS G H
Sbjct: 448 FSTAAASAAAMKDAMDKAEAKFRHAKERREKESLKASRSREGDH 491
>At3g60600.1 68416.m06781 vesicle-associated membrane protein,
putative / VAMP, putative similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 256
Score = 31.1 bits (67), Expect = 0.39
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 74 QSGTHTQRVVSSD-HSGVNSSERYIVDNQSGHNKNSATYITKGIHVEDNISKSTQHVTNK 250
+ G+ + VS + H S ER+IVDN++GH +N++ + + + K + N
Sbjct: 156 EEGSSPRASVSDNGHGSEFSFERFIVDNKAGHQENTSE--ARALITKLTEEKQSAIQLNN 213
Query: 251 SLSDSVTKTSIEFQRAMHGG 310
L + + E +++ GG
Sbjct: 214 RLQRELDQLRRESKKSQSGG 233
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 30.7 bits (66), Expect = 0.51
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +2
Query: 110 DHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEDNISKSTQHVTNKSLSDSVTKTSIE 286
+H +N SE + DN+ + S TY + +H N +KST+ KSL D VT+ E
Sbjct: 878 NHHLMNCSEPTVKDNKLIISAESITYGLQLLHEIQNENKSTK----KSLKDVVTENEFE 932
>At5g17200.1 68418.m02015 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 421
Score = 29.9 bits (64), Expect = 0.90
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Frame = +2
Query: 50 TSNNQDIK--QSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEDNIS 223
T N IK Q+G+ R +S + + +SE I+ +Q+ HN + I+K N
Sbjct: 277 TQNGVRIKTYQNGSGYARKISFEDINMVASENPIIIDQTYHNGGTNGGISKSSSSYQNCH 336
Query: 224 KSTQHVTNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRTSDLISD-ASSTN 400
+ + T V T + + R + G S ++ D + SD++ D + +
Sbjct: 337 LTAKQRTPSGNGKGVKVTDVRYAR-IRG--SSASDQDITLNCDADLGCSDIVMDNVNMVS 393
Query: 401 SVLHRKGLSSNTEAHHSI 454
+ K SS AH S+
Sbjct: 394 ATFGHKLFSSCKNAHGSL 411
>At3g52910.1 68416.m05831 expressed protein nearly identical to
transcription activator GRL4 [Arabidopsis thaliana]
GI:21539886 (unpublished)
Length = 548
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +2
Query: 242 TNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRT-----SDLISDASSTNSV 406
T+ +S ++ + E + M ++ ++ + GG+H ++ + ASST+SV
Sbjct: 309 TSSDVSLKLSTGNEEEEENMRNNNNEREQMNWWSNGGNHHNNMGGPLAEALRSASSTSSV 368
Query: 407 LHRKGLSS 430
LH+ G+S+
Sbjct: 369 LHQMGIST 376
>At3g49260.2 68416.m05384 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 471
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 11 RSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQS 160
+S +S+ + SNN DI Q TQ VVS +H SS D +S
Sbjct: 19 KSSPKDSKRENNIGSNNADIWQQQHDTQEVVSFEHFPAESSPEISHDVES 68
>At3g49260.1 68416.m05383 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 471
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 11 RSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQS 160
+S +S+ + SNN DI Q TQ VVS +H SS D +S
Sbjct: 19 KSSPKDSKRENNIGSNNADIWQQQHDTQEVVSFEHFPAESSPEISHDVES 68
>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
protein, Candida albicans, PIR2:S58135
Length = 343
Score = 27.9 bits (59), Expect = 3.6
Identities = 30/127 (23%), Positives = 48/127 (37%)
Frame = +2
Query: 77 SGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGIHVEDNISKSTQHVTNKSL 256
SG++ S H+G +S + S HN +++ T H N S+ + + +
Sbjct: 89 SGSNHSSGTGSTHNGHSSGSNHSSATGSTHNGHTS---TGSNHSSGNGSRHNGYSSGSNH 145
Query: 257 SDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRTSDLISDASSTNSVLHRKGLSSNT 436
S S + H S +N S G HK S + +S S + SN
Sbjct: 146 SSSTGSNHSSSTGSTHNNHSSGSN-HSSILGSTHKNHSSGSNHSSIVGSTHNNHSSGSN- 203
Query: 437 EAHHSIS 457
H SI+
Sbjct: 204 --HSSIT 208
Score = 26.6 bits (56), Expect = 8.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +2
Query: 14 SDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSAT 184
S + S HS+ +N TH S+HS + S ++ SG N +S T
Sbjct: 154 SSSTGSTHNNHSSGSNHSSILGSTHKNHSSGSNHSSIVGSTHN--NHSSGSNHSSIT 208
>At4g29980.1 68417.m04264 expressed protein
Length = 169
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 175 IFVMPTLVIHNISFAGIYTRVIGGN 101
+FV PT+VIH ++F ++R GG+
Sbjct: 144 LFVSPTIVIHRMAFPFNFSRYGGGD 168
>At1g61110.1 68414.m06885 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAM protein GI:1279639 from [Petunia hybrida]
Length = 323
Score = 27.9 bits (59), Expect = 3.6
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +2
Query: 116 SGVNSSERYIVDNQSGHNKNSATYITKGIHV-EDNISKSTQHVTNKSLSDSVTKTS-IEF 289
S NSS ++DN +N N+ + G+ V D S Q+ S S + S +
Sbjct: 202 SSANSSSTSVLDNNDNNNNNNEEHFFDGMVVSSDKRSLCGQYRMGHEASGSSSFGSFLSS 261
Query: 290 QRAMHGGDDSTTNVDRS 340
+R H GD + N + S
Sbjct: 262 KRFHHTGDLNNDNYNVS 278
>At5g35230.1 68418.m04177 hypothetical protein
Length = 366
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 12 VQITLIRELLNIRHRITKTLNSQALIPK 95
+Q TLIR+ N+ H +T + NSQ L+ K
Sbjct: 313 LQYTLIRDGGNLEHLLTLSKNSQTLLCK 340
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 27.5 bits (58), Expect = 4.8
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 8/156 (5%)
Frame = +2
Query: 11 RSDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYI 190
R D V+ T S Q + SG + + ++ S + D G ++
Sbjct: 958 REDGVSDD-TSEDHSYKQQWRASGNEEESYFETGNTASGDSSNQMSDPHKGIIRHKGY-- 1014
Query: 191 TKGIHVEDNISKST--QHVTNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKR 364
K +D +S + + T ++ + S + Q +M+ DD ++DR RG +
Sbjct: 1015 -KEFESDDEVSDRSLGEEYTVRACAASESSMENGSQHSMYDHDDDDDDIDRQPRGIPRSQ 1073
Query: 365 TSDL----ISDASSTNSVLHRKG-LS-SNTEAHHSI 454
+ + +S S N V + G +S SN +A+ +
Sbjct: 1074 QTRVFRNPVSYESEDNGVYQQSGRISISNRQANRMV 1109
>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
similar to SP|Q9UPY8 Microtubule-associated protein
RP/EB family member 3 (Protein EB3) {Homo sapiens};
contains Pfam profiles PF00307: Calponin homology (CH)
domain, PF03271: EB1 protein
Length = 329
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 278 SIEFQRAMHGGDDSTTNVDRSTRGGHHKRTSDLISDASSTNSVLHRKGLSSNTEAHHS 451
++E + A GG ++T + + G +S SS+N + S+NT HHS
Sbjct: 126 ALERREASKGGKEATKRAAATQQSGKSS-SSSAPPRPSSSNGTRKHEPQSNNTGTHHS 182
>At5g37460.1 68418.m04508 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 622
Score = 27.1 bits (57), Expect = 6.3
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +2
Query: 86 HTQRVVSSDHSGVNSSERYIVD--NQSGHNKNSATYITKGI-HVEDNISKSTQHVTNKSL 256
HT + V D S + + ++ Q G + + + + HV I K Q VT +L
Sbjct: 376 HTSKRVEIDFSVMRQLQPLLISCLRQEGITDSMFKVLGEVVSHVAFEIFKH-QDVTWYAL 434
Query: 257 SDSVTKTSIEFQRAMH 304
+ +T + IEFQRA++
Sbjct: 435 RNYITSSKIEFQRAVY 450
>At1g72680.1 68414.m08405 cinnamyl-alcohol dehydrogenase, putative
similar to cinnamyl-alcohol dehydrogenase GB:AAC35846
[Medicago sativa], SP|Q08350 [Picea abies]
Length = 355
Score = 27.1 bits (57), Expect = 6.3
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Frame = +2
Query: 98 VVSSDHSGVNSSER---YIVDNQSGHN---------KNSATYITKGIHVEDNISKSTQHV 241
V+SSDH + + E+ ++VD SG + K + TY+ G E IS + ++
Sbjct: 231 VISSDHDQMKALEKSLDFLVDTASGDHAFDPYMSLLKIAGTYVLVGFPSEIKISPANLNL 290
Query: 242 TNKSLSDSVT 271
+ L+ SVT
Sbjct: 291 GMRMLAGSVT 300
>At5g23100.1 68418.m02702 expressed protein contains Pfam profile
PF04759: Protein of unknown function, DUF617
Length = 277
Score = 26.6 bits (56), Expect = 8.4
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 260 DSVTKTSIEFQRAMHGGDDSTTNVDRSTRGGHHKRTSDLISDASSTNSVL-HRKGLSS 430
D +K F G D +V HH T S +SS+++V+ H+K L S
Sbjct: 4 DFASKRHNSFHWTRKVGSDENDDVSSHKPLPHHNNTKPSSSSSSSSSNVITHKKKLQS 61
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 26.6 bits (56), Expect = 8.4
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +2
Query: 161 GHNKNSATYITK-GIHVEDNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDDSTTNVDR 337
GH + K G ++ N++ S V S +T TSI R H G T+N +
Sbjct: 889 GHGQEHPEITVKFGSDLDGNVTNSLSMVNGDSAD--LTLTSIS--REQHQGHSMTSNNNG 944
Query: 338 STRGGH 355
S G H
Sbjct: 945 SNSGSH 950
>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
response factor 30 (GI:20145855) {Arabidopsis thaliana}
Length = 313
Score = 26.6 bits (56), Expect = 8.4
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Frame = +2
Query: 14 SDNVNSRITQHSTSNNQDIKQSGTHTQRVVSSDHSGVNSSERYIVDNQSGHNKNSATYIT 193
S S HS+ +N TH S+HS + S ++ SG N +S T
Sbjct: 107 SSGTGSTHNGHSSGSNHSSSTGSTHNNHSSGSNHSSIVGSTH--KNHGSGSNHSSIAGPT 164
Query: 194 KGIHV----EDNISKSTQHVTNKSLSDSVTKT 277
H +I ST + T SL + T
Sbjct: 165 HNGHSSGSNHSSIIGSTHNHTAPSLGRKIAVT 196
>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
identical to cDNA CIP4.1 mRNA for COP1-interacting
protein 4.1, GI:13160649
Length = 976
Score = 26.6 bits (56), Expect = 8.4
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +2
Query: 50 TSNNQDIKQSGTHTQRVVSSDHSGVNSSERYI--VDNQSGHNKNSATYITKGIHVEDNIS 223
T NN+ + V+ VN+ E+ + + N NK++ + E++ S
Sbjct: 883 TVNNKKEAVKKSSKSVTVNKSKMNVNNKEKAVKKISNSVTANKSTTNFFKDA---EEDES 939
Query: 224 KSTQHVTNKSLSDSVTKTSIEFQRAMH 304
K+T + K+ SDS + + +MH
Sbjct: 940 KTTTSDSTKAPSDSSSDNDSDVTSSMH 966
>At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transferase,
putative similar to O-GlcNAc transferase, Homo sapiens
[SP|O15294], Rattus norvegicus [SP|P56558]; contains
Pfam profile PF00515: TPR Domain; identical to cDNA
GI:18139886
Length = 977
Score = 26.6 bits (56), Expect = 8.4
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 167 NKNSATYITKGIHVEDNISKSTQHVTNKSLSDSVTKTSIEFQRAMHGGDD 316
+KN A I++ + + D + + + S+S S + + ++ H GDD
Sbjct: 4 SKNGAAMISRPVFLSDRVDEVFSRKLDLSVSSSSSSSLLQQFNKTHEGDD 53
>At1g22240.1 68414.m02780 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 pumilio-family
RNA binding domain
Length = 515
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 98 VVSSDHSGVNSSERYIVDNQSGHNKNSATYITKGI 202
V S DHS NSS R+ + + S ++ +S Y + G+
Sbjct: 37 VFSGDHSSYNSSSRFCLRSPSDYSLSS--YFSNGL 69
>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
domain-containing protein weak similarity to Hrs [Rattus
norvegicus] GI:8547026; contains Pfam profiles PF00790:
VHS domain, PF03127: GAT domain
Length = 506
Score = 26.6 bits (56), Expect = 8.4
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +2
Query: 194 KGIHVEDNISKSTQHVTNKSLSDSVTKTS---IEFQRAMHGGDDSTTNVDRSTRGGHHKR 364
+G+ + DN+ + QH +K+ +SV T+ I H DD ++ D KR
Sbjct: 248 QGLALNDNLQRVLQHHDDKAKGNSVPATAPTPIPLVSINHDDDDDESDDDFLQLAHRSKR 307
Query: 365 TSDLISDASSTNSVL 409
S + + N +L
Sbjct: 308 ESARGTGQGNFNPIL 322
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,071,501
Number of Sequences: 28952
Number of extensions: 204836
Number of successful extensions: 672
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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