Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C01
(462 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 198 5e-50
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 197 1e-49
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 195 4e-49
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 165 4e-40
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 151 7e-36
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 149 4e-35
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 134 7e-31
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 133 2e-30
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 129 3e-29
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 124 7e-28
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 122 3e-27
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 95 7e-19
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 95 7e-19
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 91 1e-17
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 58 9e-08
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 58 9e-08
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 54 2e-06
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 54 2e-06
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 53 3e-06
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 50 3e-05
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 49 4e-05
UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5; Sulfolo... 48 1e-04
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 47 2e-04
UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2; Desulfu... 46 5e-04
UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyr... 45 7e-04
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 45 0.001
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 44 0.001
UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyc... 44 0.002
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 43 0.003
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 42 0.005
UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8; Euryarc... 38 0.11
UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus ... 36 0.32
UniRef50_Q2H164 Cluster: Putative uncharacterized protein; n=1; ... 35 0.75
UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus ... 35 0.75
UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum... 35 0.99
UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcin... 34 1.7
UniRef50_Q4RQ03 Cluster: Chromosome 17 SCAF15006, whole genome s... 33 2.3
UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 33 3.0
UniRef50_A1TZN4 Cluster: Flagellar hook-associated protein FlgK;... 32 5.3
UniRef50_Q6ZAY7 Cluster: Putative uncharacterized protein OJ1540... 32 5.3
UniRef50_O55708 Cluster: 067R; n=1; Invertebrate iridescent viru... 32 7.0
UniRef50_A0N0V6 Cluster: Putative regulatory protein; n=2; Azoar... 32 7.0
UniRef50_Q6NZL8 Cluster: Signal peptide, CUB and EGF-like domain... 32 7.0
UniRef50_P17473 Cluster: Trans-acting transcriptional protein IC... 31 9.2
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 198 bits (483), Expect = 5e-50
Identities = 104/161 (64%), Positives = 120/161 (74%), Gaps = 9/161 (5%)
Frame = +2
Query: 2 KLNVSYP-NGMSSI*MVDTTPSSMKAYGR*MCNLLATME--------VISGAGGNDKQGF 154
KLN+S+P G + VD Y + M +A V+ +GGNDKQGF
Sbjct: 2 KLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGF 61
Query: 155 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 334
PMKQGVLT+ RVRLL+SKGHSCYRPRR GERKRKSVRGCIVDANLSVL LVIV+KG ++I
Sbjct: 62 PMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDI 121
Query: 335 PGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLL 457
PGLTD VPRRLGPKRAS+IRKLFNL KEDDVR+YVV++ L
Sbjct: 122 PGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL 162
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 197 bits (480), Expect = 1e-49
Identities = 88/110 (80%), Positives = 100/110 (90%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVI
Sbjct: 54 GGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVI 113
Query: 311 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLP 460
V+KG Q+IPGLTD +PRRLGPKR KIRK+FNL KEDDVR+YV++R LP
Sbjct: 114 VKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLP 163
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 195 bits (475), Expect = 4e-49
Identities = 91/111 (81%), Positives = 100/111 (90%)
Frame = +2
Query: 128 AGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALV 307
AGGNDKQGFPMKQGVLTN+RVRLL+ KGHSCYRPRR GERKRKSVRGCIVD NLS LAL+
Sbjct: 53 AGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALI 112
Query: 308 IVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLP 460
+V+KG ++IPGLTD V RRLGPKRAS IRKL+NL KEDDVR+YVVKR LP
Sbjct: 113 VVKKGEKDIPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYVVKRPLP 163
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 165 bits (401), Expect = 4e-40
Identities = 76/109 (69%), Positives = 89/109 (81%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GGNDKQGFPM QGVLTN+RVRLL KG CYRPR+ GE++RKSVRGCIV +LS L L +
Sbjct: 95 GGNDKQGFPMMQGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTL 154
Query: 311 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLL 457
V+KG EIPGLTD V ++LGPKRA+KIRKLFNL K DDVR+YV+ R +
Sbjct: 155 VKKGTNEIPGLTDKAVGKKLGPKRATKIRKLFNLDKTDDVRKYVIGRAI 203
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 151 bits (366), Expect = 7e-36
Identities = 70/105 (66%), Positives = 82/105 (78%)
Frame = +2
Query: 116 VISGAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSV 295
V+ GGNDKQGFPM+QGVL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ V
Sbjct: 49 VLKITGGNDKQGFPMRQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRV 108
Query: 296 LALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDV 430
LAL +V+KGA EI GLTD VPRRLGPKR +K+R+LF KK D V
Sbjct: 109 LALQVVKKGANEIAGLTDQNVPRRLGPKRLTKLRRLFGFKKADGV 153
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 149 bits (360), Expect = 4e-35
Identities = 71/111 (63%), Positives = 87/111 (78%), Gaps = 3/111 (2%)
Frame = +2
Query: 128 AGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALV 307
AGGNDK GFPMKQGV+ RVRLL+S+GHSC+ RR G RKRKSVRGCIV ++ VLAL
Sbjct: 53 AGGNDKDGFPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQ 112
Query: 308 IVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDD---VRRYVVKR 451
IV+KG EI GLT +PR+LGPKRA+ I+KLF LKKEDD +++ V++R
Sbjct: 113 IVKKGVAEIDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRR 163
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 134 bits (325), Expect = 7e-31
Identities = 63/108 (58%), Positives = 80/108 (74%), Gaps = 1/108 (0%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GG DKQGFPMKQGV+T R+RLL+ G SCYRPR+DGERKRK+VRGCI+ +S L V+
Sbjct: 54 GGFDKQGFPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISALHCVV 113
Query: 311 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNL-KKEDDVRRYVVKR 451
++KG +EI GLT VPRR GPKRAS +R +F + + D + V+KR
Sbjct: 114 LQKGEKEIDGLTTTAVPRRFGPKRASTLRAMFGITDSKFDASKLVLKR 161
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 133 bits (321), Expect = 2e-30
Identities = 59/112 (52%), Positives = 84/112 (75%)
Frame = +2
Query: 116 VISGAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSV 295
++ GG DK GFPM GV TN+RVRLL+ + CY+P R+GER+RK+VRG IV ++SV
Sbjct: 48 ILKITGGCDKDGFPMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISV 107
Query: 296 LALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 451
L ++V+KG EI G+T+ +P R GP+RAS RKLFNL ++DDV+++V++R
Sbjct: 108 LNTIVVKKGEGEIEGVTNDALPMRAGPQRASHFRKLFNLSQKDDVKKFVIRR 159
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 129 bits (311), Expect = 3e-29
Identities = 64/100 (64%), Positives = 74/100 (74%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GGNDKQG VL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +
Sbjct: 65 GGNDKQG------VLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQV 118
Query: 311 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDV 430
V+KGA EI GLTD VPRRLGPKR +K+R+LF KK D V
Sbjct: 119 VKKGANEIAGLTDQNVPRRLGPKRLTKLRRLFGFKKADRV 158
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 124 bits (300), Expect = 7e-28
Identities = 59/94 (62%), Positives = 72/94 (76%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GGND QGFPM QGVL + R RLL+ +G CY RR+GERKRKS+RGCIV +L L++V+
Sbjct: 60 GGNDAQGFPMYQGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVL 119
Query: 311 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNL 412
V G + +PGLTD VP+RL PKRASKIR+LF L
Sbjct: 120 VDAGDKTLPGLTDVVVPKRLVPKRASKIRRLFGL 153
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 122 bits (295), Expect = 3e-27
Identities = 59/109 (54%), Positives = 81/109 (74%), Gaps = 2/109 (1%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRR--DGERKRKSVRGCIVDANLSVLAL 304
GG+DK GFPM GVL +SRV LL+ +G + R GER+RK+VRGC++ ++++++ +
Sbjct: 55 GGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNV 114
Query: 305 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 451
I + G Q I G+TD PRRLGPKRASKIRKLFNL + +DVR+YVV+R
Sbjct: 115 TISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRR 163
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 95.1 bits (226), Expect = 7e-19
Identities = 53/100 (53%), Positives = 67/100 (67%)
Frame = +2
Query: 128 AGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALV 307
AGGNDKQGFPMKQGVLT+ R+RLL K HSC+ PR + RK K+VR V+AN+S L LV
Sbjct: 53 AGGNDKQGFPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLV 111
Query: 308 IVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDD 427
+++K P RLGP R+S I K++ L +EDD
Sbjct: 112 VLKKNPS----------PCRLGPVRSSNISKIYYLCEEDD 141
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 95.1 bits (226), Expect = 7e-19
Identities = 49/98 (50%), Positives = 64/98 (65%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GG+D QGFPM G LT RVR L+SKG + YR RR G R+RKSVRG IV + VL L+I
Sbjct: 39 GGDDYQGFPMVSGHLTKKRVRPLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLII 98
Query: 311 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKED 424
+R G +EI GLT+ P++ K+RK+F + E+
Sbjct: 99 LRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEE 136
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 91.1 bits (216), Expect = 1e-17
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 2/108 (1%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLAL 304
GG DKQGFPMK+G+L+ SRV++L+ KG + R + GER RKSVRGCIV +SVL +
Sbjct: 54 GGQDKQGFPMKEGILSPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVLNI 113
Query: 305 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVK 448
++ ++ +T+ + L KR+S +RK+ L K DD+R++ +K
Sbjct: 114 KLLTNKNDDLL-ITNKNSEKTLTHKRSSNLRKVLCLTKTDDIRKHYIK 160
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 58.0 bits (134), Expect = 9e-08
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +2
Query: 326 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 451
++IPGLTD PR +GPKRAS+IRKLFNL KEDD + + R
Sbjct: 80 KDIPGLTDTTEPRHVGPKRASRIRKLFNLSKEDDAAQNSILR 121
Score = 44.4 bits (100), Expect = 0.001
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +2
Query: 128 AGGNDKQGFPMKQGVLTNSRVRLLM 202
+GGNDKQGFPMKQ VLT+ R+ LL+
Sbjct: 53 SGGNDKQGFPMKQDVLTHDRIHLLL 77
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 58.0 bits (134), Expect = 9e-08
Identities = 36/81 (44%), Positives = 49/81 (60%)
Frame = +2
Query: 185 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPR 364
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K P
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PC 67
Query: 365 RLGPKRASKIRKLFNLKKEDD 427
RLGP R+S I K++ L +EDD
Sbjct: 68 RLGPVRSSNISKIYYLCEEDD 88
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 54.0 bits (124), Expect = 2e-06
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GG DK GFPM+ V RV++L+S+G +RPR GER++K+V G + N+ + + I
Sbjct: 65 GGTDKDGFPMRPDVHGPRRVKILLSRGPG-FRPRERGERRKKTVHGNTISPNIVQVNMKI 123
Query: 311 V 313
V
Sbjct: 124 V 124
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 54.0 bits (124), Expect = 2e-06
Identities = 26/64 (40%), Positives = 40/64 (62%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GG D+ GFPM+ + +R RLL+S G +RP+ G RKRK VRG ++ ++ + V+
Sbjct: 54 GGTDRDGFPMRPDLPGTARRRLLLSGGVG-FRPKEKGLRKRKGVRGRVISKDILQINTVV 112
Query: 311 VRKG 322
V+ G
Sbjct: 113 VKHG 116
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 53.2 bits (122), Expect = 3e-06
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 268
GG DK GFPM+ + RVR+L+SKG +RP+ GER++K+VRG
Sbjct: 65 GGTDKDGFPMRPDIHGPRRVRVLLSKGPG-FRPKEKGERRKKTVRG 109
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 49.6 bits (113), Expect = 3e-05
Identities = 24/68 (35%), Positives = 43/68 (63%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GG+DK GFPMK+ V R + L++ G + ++P + G R+RK+VRG + ++S + + +
Sbjct: 51 GGSDKNGFPMKEDVDGTRRFKSLVN-GGTGFKPTKKGLRRRKTVRGNTIADDISQINVKV 109
Query: 311 VRKGAQEI 334
+G Q +
Sbjct: 110 SERGEQTL 117
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 49.2 bits (112), Expect = 4e-05
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = -3
Query: 385 RTLGT*TAGNFTVSQSRNFLCTFADNDQG*D*KVSINNATTNRLAFPLTVTTWSVARVA- 209
RTL T +F + ++R+ DNDQ V ++ATT RLA T+ + A A
Sbjct: 114 RTLRTTETRHFGIGEARDVGVALLDNDQVQHGNVLGDDATTARLASAFTLASAVAAEAAR 173
Query: 208 -F*HQETYTAVSQDSLFHREALLVVT 134
H++ +T V Q +L H EALLVVT
Sbjct: 174 ALGHEQEHTLVRQHALLHAEALLVVT 199
>UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S6e -
Sulfolobus solfataricus
Length = 214
Score = 48.0 bits (109), Expect = 1e-04
Identities = 22/62 (35%), Positives = 39/62 (62%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GG+D GFPM+ V+ ++ ++L+S G + P +GER+RK++RG + + + +I
Sbjct: 154 GGSDNSGFPMRFDVIGAAKRKILLS-GPPGFYPNENGERRRKTIRGNTISQEIVQINTII 212
Query: 311 VR 316
VR
Sbjct: 213 VR 214
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 46.8 bits (106), Expect = 2e-04
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +2
Query: 152 FPMKQGVLTNSRVRLLMSKGHS-CYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQ 328
F MKQ VL + RV LL++ HS Y+P R E S++ V +S+L +VI+ G +
Sbjct: 50 FSMKQEVLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDA-VKLPISLLNMVIIINGRK 108
Query: 329 EIPGLTDGEVPRR 367
+IPG T P+R
Sbjct: 109 DIPGQTKRWAPKR 121
>UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S6e -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 217
Score = 45.6 bits (103), Expect = 5e-04
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GG+D GFPM + + R+L+S G + PR GER+RK+VRG + ++ + VI
Sbjct: 153 GGSDNSGFPMLPSIPGPVKKRVLLS-GPPGFHPREKGERRRKTVRGNTITHDIVQINTVI 211
Query: 311 V 313
V
Sbjct: 212 V 212
>UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyrum
pernix|Rep: 30S ribosomal protein S6e - Aeropyrum pernix
Length = 235
Score = 45.2 bits (102), Expect = 7e-04
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 277
GG D G PM GV + R ++L++ G + PR GER+RKSVRG ++
Sbjct: 162 GGTDATGIPMHPGVPGSGRYKVLLA-GPPGFHPRERGERRRKSVRGRMI 209
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 44.8 bits (101), Expect = 0.001
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GG+D+ GFPM+ + + R L+S G + PR GER+RK+VRG + ++ + I
Sbjct: 175 GGSDESGFPMRPDIPGPVKKRALLS-GPPGFWPREKGERRRKTVRGNTISEDIVQINTKI 233
Query: 311 VRK 319
V++
Sbjct: 234 VKQ 236
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 44.4 bits (100), Expect = 0.001
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 304
GG+DKQGF +K+ + T R+++ + KG R +R K+++VRG I+ + +S + L
Sbjct: 53 GGHDKQGFLLKKNLNTFERLKINVKKGSLGNRSHFKRKNLTKKRTVRGGILSSEISSINL 112
Query: 305 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLF 406
V + +E E ++L KR +K++ LF
Sbjct: 113 VKLPNNVKESSVFPSKE--QKLA-KRVTKLKTLF 143
>UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyces
maris DSM 8797|Rep: Pseudouridine synthase -
Planctomyces maris DSM 8797
Length = 352
Score = 43.6 bits (98), Expect = 0.002
Identities = 28/97 (28%), Positives = 45/97 (46%)
Frame = +2
Query: 143 KQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 322
++G K+GV S ++ L +G S + E + + +R + V+ LV +R G
Sbjct: 171 RKGVRFKEGVFRVSGLKYLKKQGKSAFLELTLHEGQNREIRRMMARIGHKVIQLVRIRFG 230
Query: 323 AQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVR 433
+ L GE RRL K+R+L N K D+R
Sbjct: 231 PLNLGKLKTGE-SRRLSDTELKKLRQLLNEKHSPDIR 266
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 43.2 bits (97), Expect = 0.003
Identities = 20/70 (28%), Positives = 41/70 (58%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GG+D+ GF M+ + ++R+L+ +G Y + G R+RKS+RG + +++++ +
Sbjct: 50 GGSDRCGFAMRHDIHGAMKMRVLLKEGPG-YNVKEKGLRRRKSLRGNTISKDITLINTKV 108
Query: 311 VRKGAQEIPG 340
V G+ + G
Sbjct: 109 VEYGSAPLGG 118
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 42.3 bits (95), Expect = 0.005
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GG+D G PM++ V + + +L+ +G + + P DGERKR +VRG V ++ L + I
Sbjct: 54 GGSDDAGRPMREDVDGSDLMEVLL-EGGAGFNPDEDGERKRVTVRGKEVSEAVAQLNVAI 112
Query: 311 VRKGAQEIPGL--TDGE 355
G + + L DG+
Sbjct: 113 DEHGEEPVAELLGADGD 129
>UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 136
Score = 37.9 bits (84), Expect = 0.11
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
GG D GF MK + R R+L + G Y P+ G+R+RK +RG + ++ + +
Sbjct: 54 GGCDGSGFVMKPDLPGPRRQRILTATGVG-YVPKLPGQRRRKMMRGKEIAPDIVQVNAKV 112
Query: 311 VRKGAQEIPGL 343
V G++ I L
Sbjct: 113 VEYGSKSIKAL 123
>UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S6e -
Methanoregula boonei (strain 6A8)
Length = 143
Score = 36.3 bits (80), Expect = 0.32
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVR 265
GG+D+ G P ++ + R +LL+++G + P +GERKRK +R
Sbjct: 54 GGSDQTGTPARKSLPGAGRRKLLLAEGVG-FHPVMEGERKRKMIR 97
>UniRef50_Q2H164 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 744
Score = 35.1 bits (77), Expect = 0.75
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = -1
Query: 399 LRILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRGL* 220
LR +A GP RRG +P +SP S P R+ R R+ ++ QP + +PS+ G
Sbjct: 361 LRSNNAPDGPARRGQTPPISPPPSETPTRSAPREAMGRILTSSQPPAATQ--TPSQTG-- 416
Query: 219 QEWP 208
Q +P
Sbjct: 417 QRYP 420
>UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S6e
- Candidatus Nitrosopumilus maritimus SCM1
Length = 137
Score = 35.1 bits (77), Expect = 0.75
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 289
GG+DK G PM+ + +R +L+SKG + G+R RK +RG V +
Sbjct: 52 GGSDKSGVPMRNDIHGAARKYVLLSKGVG-LQDAEKGQRVRKLMRGNTVSEEI 103
>UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S6E - Cenarchaeum
symbiosum
Length = 133
Score = 34.7 bits (76), Expect = 0.99
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 268
GG+DK G PM+ V +R +L+S+G R G R RK VRG
Sbjct: 58 GGSDKSGVPMRPDVHGPARKYVLLSRGVG-LRDAERGGRTRKLVRG 102
>UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcina
acetivorans|Rep: Glycosyltransferase - Methanosarcina
acetivorans
Length = 812
Score = 33.9 bits (74), Expect = 1.7
Identities = 13/61 (21%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 155 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV-DANLSVLALVIVRKGAQE 331
P K+ ++T++R ++L+ +SCY PR G+ + ++ + + ++++ +++ K Q
Sbjct: 405 PAKKNIITSNREKILVLATYSCYPPRGGGQHRLYNIYSLLAKEFDVTICSIIEANKQYQN 464
Query: 332 I 334
+
Sbjct: 465 L 465
>UniRef50_Q4RQ03 Cluster: Chromosome 17 SCAF15006, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 17 SCAF15006, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1364
Score = 33.5 bits (73), Expect = 2.3
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -2
Query: 320 LCGQ*PGLRLKG*HQQCNHEQTCVSS--HRHDVVCSK--SGLLTSRDVHGC*SGLPVS*G 153
LCG P L G HQ C + TC+++ ++ C++ SG R H C SG P S G
Sbjct: 363 LCGTLPDLNYCGTHQPCLNGGTCINTGPDKYQCTCAEGYSGANCERAEHACLSG-PCSNG 421
>UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S6e -
Pyrobaculum aerophilum
Length = 148
Score = 33.1 bits (72), Expect = 3.0
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG-CIVDANLSVLALV 307
GG+ +G PM GV + + +++ G Y P + G +K+K VRG I D+ + + A++
Sbjct: 59 GGSGIEGAPMHPGVPGPVK-KYILADGPPGYWPPKKGMKKKKLVRGNTISDSIVQINAVI 117
Query: 308 IVRKGAQEIPGLTDG 352
+ K P + G
Sbjct: 118 VYPKDYTGPPAIPLG 132
>UniRef50_A1TZN4 Cluster: Flagellar hook-associated protein FlgK;
n=2; Marinobacter|Rep: Flagellar hook-associated protein
FlgK - Marinobacter aquaeolei (strain ATCC 700491 / DSM
11845 / VT8)(Marinobacter hydrocarbonoclasticus (strain
DSM 11845))
Length = 688
Score = 32.3 bits (70), Expect = 5.3
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +2
Query: 140 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 319
D P +Q VL+ ++ + +G + ++ K + +G + DAN + ++ +
Sbjct: 123 DPTSLPQRQLVLSEAQQLVNRFQGLNQEFIQQRESVKTQMQQG-VKDANTLLKSIAELNL 181
Query: 320 GAQEIPGLTDGEVPRRLGPKRASKIRKLFNL 412
E PGL G P L KR K+R+L L
Sbjct: 182 AISESPGLAQGREPLELMDKRDEKLRQLSEL 212
>UniRef50_Q6ZAY7 Cluster: Putative uncharacterized protein
OJ1540_G08.6; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1540_G08.6 - Oryza sativa subsp. japonica (Rice)
Length = 240
Score = 32.3 bits (70), Expect = 5.3
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 381 RLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRR 229
R GPRRR T+P+ C P +++ R + A+ P SP+RR
Sbjct: 166 RHGPRRRSTAPARRLRPPCRPTQSLARLRCGAAAAATIPTRGAAPASPARR 216
>UniRef50_O55708 Cluster: 067R; n=1; Invertebrate iridescent virus
6|Rep: 067R - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 456
Score = 31.9 bits (69), Expect = 7.0
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 62 SSMKAYGR*MCNLLATMEVISGAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP 229
SS++ Y + E++ G G D +GF +Q + NS +LL+ G Y P
Sbjct: 280 SSVETYKNYLVGGFMVCEMVFGRIGFDMEGFTQQQLLSMNSYEKLLLELGEKTYTP 335
>UniRef50_A0N0V6 Cluster: Putative regulatory protein; n=2; Azoarcus
anaerobius|Rep: Putative regulatory protein - Azoarcus
anaerobius
Length = 661
Score = 31.9 bits (69), Expect = 7.0
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +2
Query: 197 LMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGP 376
++ GH YR R +R+ D ++ + L ++R +E G D V R+LG
Sbjct: 582 IIKPGHLAYRMRDRRTPERQHAAASSRDQSIPAIQLDLIRSAIEEFNGNVD-LVGRKLGL 640
Query: 377 KRASKIRKL 403
RA+ R++
Sbjct: 641 SRATVYRRM 649
>UniRef50_Q6NZL8 Cluster: Signal peptide, CUB and EGF-like
domain-containing protein 1 precursor; n=10;
Tetrapoda|Rep: Signal peptide, CUB and EGF-like
domain-containing protein 1 precursor - Mus musculus
(Mouse)
Length = 1018
Score = 31.9 bits (69), Expect = 7.0
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -1
Query: 390 LDARLGPRRRGTSPSVSPGISCA---PLRTMTRAKTERLASTMQPRTDLR 250
L + P+R GTS S PG S A P+R R K +QPR+ R
Sbjct: 487 LQGKTLPKRNGTSSSTGPGCSDAPTTPIRQKARFKIRDAKCHLQPRSQER 536
>UniRef50_P17473 Cluster: Trans-acting transcriptional protein ICP4;
n=11; Varicellovirus|Rep: Trans-acting transcriptional
protein ICP4 - Equine herpesvirus 1 (strain Kentucky A)
(EHV-1) (Equine abortionvirus)
Length = 1487
Score = 31.5 bits (68), Expect = 9.2
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 227 PRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRA 385
PR R R+ C++ AL+ +R GA +PGL E+P P A
Sbjct: 651 PRPSAFRLRELGDACVLACQAVFEALLRLRGGASAVPGLDPSEIPSPACPPEA 703
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 484,622,460
Number of Sequences: 1657284
Number of extensions: 9942447
Number of successful extensions: 23603
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 23029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23582
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24771286585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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