Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C01
         (462 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   5.6  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   9.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   9.7  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 249 NASLFVVALLMLTFQ 293
           NASLF+  L+ L+F+
Sbjct: 142 NASLFIFDLIFLSFR 156


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 369 RRRGTSPSVSPGISCAPLRTMTR 301
           +R+ TSP +SP  S  P    T+
Sbjct: 471 KRQRTSPQLSPMSSLPPYPNRTQ 493


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 329 EIPGLTDGEVPRRLGPKRASK 391
           E+P L  G VPR+  P ++++
Sbjct: 817 EVPMLLHGVVPRKEIPAKSAE 837


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,444
Number of Sequences: 336
Number of extensions: 2396
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10616413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)