Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C01
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   173   1e-44
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   173   1e-44
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    31   0.11 
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    27   1.8  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   7.4  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    24   9.8  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    24   9.8  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  173 bits (421), Expect = 1e-44
 Identities = 80/107 (74%), Positives = 92/107 (85%)
 Frame = +2

Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
           GGNDKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I
Sbjct: 54  GGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAI 113

Query: 311 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 451
           V++G Q+IPGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R
Sbjct: 114 VKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRR 160


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  173 bits (420), Expect = 1e-44
 Identities = 79/107 (73%), Positives = 92/107 (85%)
 Frame = +2

Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
           GGNDKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I
Sbjct: 54  GGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAI 113

Query: 311 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 451
           +++G Q+IPGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R
Sbjct: 114 IKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRR 160


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 28/108 (25%), Positives = 53/108 (49%)
 Frame = -1

Query: 372 PRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRGL*QEWPFDIKR 193
           P R+  SP V+   +  P   +T   ++   ++ +P T     SP R       P  IKR
Sbjct: 110 PLRQTASPQVAD-TNLKPSLAVTNLNSDETNTSSEPVT-----SPLRTT-----PNSIKR 158

Query: 192 RTRLLVRTPCFIGKPCLSLPPAPEITSIVARRLHIQRPYAFIEDGVVS 49
           + RL  ++P      CL+    PEIT +++RRL +++    +++ +++
Sbjct: 159 QKRLF-KSPI---SNCLNPKSDPEITQLLSRRLKLEKEVRNLQEQLIT 202


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 216 EWPFDIKRRTRLLVRTPCFIGKPCLSLPPAPEITSIVA 103
           EWP  +K   +LLVRT  +   PC + P    I   V+
Sbjct: 26  EWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVS 63


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 194 LLMSKGHSCYRPRRDGERKRKSVRGCIVD 280
           ++ SK +S  +P+  G  KRK+ R  +VD
Sbjct: 97  VVTSKKNSRSKPKNGGASKRKASRRTVVD 125


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 58  SIFYESVWALNVQSSSDNGGYLRCRR*RQAGLPYETGSP 174
           S+F  S+  L    SS N  Y+RC +  +  LP+    P
Sbjct: 622 SMFKSSLSQLMTTVSSTNVHYIRCIKPNEEKLPWTFSPP 660


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 13  FIPERDVKYLNGGYHSIFYESVWALNVQSSSDN 111
           FIP+ + KYLN    S+ + +  +  + S  D+
Sbjct: 355 FIPKLEAKYLNNLSKSLMFSNAISCRLDSLDDD 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,790
Number of Sequences: 5004
Number of extensions: 38689
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)