BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_C01 (462 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 173 1e-44 SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 173 1e-44 SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 31 0.11 SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 1.8 SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 7.4 SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 24 9.8 SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 24 9.8 >SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizosaccharomyces pombe|chr 1|||Manual Length = 239 Score = 173 bits (421), Expect = 1e-44 Identities = 80/107 (74%), Positives = 92/107 (85%) Frame = +2 Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310 GGNDKQGFPM QGVL RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+VLAL I Sbjct: 54 GGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAI 113 Query: 311 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 451 V++G Q+IPGLTD VP+RLGPKRASKIR+ FNL KEDDVR++V++R Sbjct: 114 VKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRR 160 >SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosaccharomyces pombe|chr 1|||Manual Length = 239 Score = 173 bits (420), Expect = 1e-44 Identities = 79/107 (73%), Positives = 92/107 (85%) Frame = +2 Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310 GGNDKQGFPM QGVL RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+VLAL I Sbjct: 54 GGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAI 113 Query: 311 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 451 +++G Q+IPGLTD VP+RLGPKRASKIR+ FNL KEDDVR++V++R Sbjct: 114 IKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRR 160 >SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination repair protein Sfr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 299 Score = 30.7 bits (66), Expect = 0.11 Identities = 28/108 (25%), Positives = 53/108 (49%) Frame = -1 Query: 372 PRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRGL*QEWPFDIKR 193 P R+ SP V+ + P +T ++ ++ +P T SP R P IKR Sbjct: 110 PLRQTASPQVAD-TNLKPSLAVTNLNSDETNTSSEPVT-----SPLRTT-----PNSIKR 158 Query: 192 RTRLLVRTPCFIGKPCLSLPPAPEITSIVARRLHIQRPYAFIEDGVVS 49 + RL ++P CL+ PEIT +++RRL +++ +++ +++ Sbjct: 159 QKRLF-KSPI---SNCLNPKSDPEITQLLSRRLKLEKEVRNLQEQLIT 202 >SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 474 Score = 26.6 bits (56), Expect = 1.8 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 216 EWPFDIKRRTRLLVRTPCFIGKPCLSLPPAPEITSIVA 103 EWP +K +LLVRT + PC + P I V+ Sbjct: 26 EWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVS 63 >SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 295 Score = 24.6 bits (51), Expect = 7.4 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +2 Query: 194 LLMSKGHSCYRPRRDGERKRKSVRGCIVD 280 ++ SK +S +P+ G KRK+ R +VD Sbjct: 97 VVTSKKNSRSKPKNGGASKRKASRRTVVD 125 >SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr 2|||Manual Length = 1471 Score = 24.2 bits (50), Expect = 9.8 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +1 Query: 58 SIFYESVWALNVQSSSDNGGYLRCRR*RQAGLPYETGSP 174 S+F S+ L SS N Y+RC + + LP+ P Sbjct: 622 SMFKSSLSQLMTTVSSTNVHYIRCIKPNEEKLPWTFSPP 660 >SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 868 Score = 24.2 bits (50), Expect = 9.8 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = +1 Query: 13 FIPERDVKYLNGGYHSIFYESVWALNVQSSSDN 111 FIP+ + KYLN S+ + + + + S D+ Sbjct: 355 FIPKLEAKYLNNLSKSLMFSNAISCRLDSLDDD 387 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,954,790 Number of Sequences: 5004 Number of extensions: 38689 Number of successful extensions: 72 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 72 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 174340060 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -