BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_C01 (462 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 157 5e-39 07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 156 7e-39 11_04_0329 - 16442298-16443734 29 1.4 03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 29 1.8 09_04_0080 + 14393797-14393894,14395100-14395202,14395307-143954... 28 3.2 05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691 27 5.6 03_06_0524 - 34502286-34502609,34502998-34503084,34503280-345033... 27 5.6 03_05_0592 + 25952603-25952983,25953197-25953547 27 7.3 02_05_0114 + 25958834-25961296 27 7.3 >03_03_0207 - 15455163-15455389,15455623-15455895,15455991-15456099, 15456186-15456243,15457002-15457066,15457190-15457195 Length = 245 Score = 157 bits (380), Expect = 5e-39 Identities = 76/106 (71%), Positives = 88/106 (83%), Gaps = 2/106 (1%) Frame = +2 Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 304 GG DKQGFPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ L Sbjct: 54 GGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINL 113 Query: 305 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV 442 VIV+KG ++PGLTD E PR GPKRASKIRKLFNL K+DDVR+YV Sbjct: 114 VIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYV 159 >07_03_1309 + 25669394-25669399,25669520-25669584,25670543-25670600, 25670683-25670791,25670872-25671144,25671348-25671589 Length = 250 Score = 156 bits (379), Expect = 7e-39 Identities = 76/106 (71%), Positives = 87/106 (82%), Gaps = 2/106 (1%) Frame = +2 Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 304 GG DKQGFPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ L Sbjct: 54 GGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINL 113 Query: 305 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV 442 VIV+KG ++PGLTD E PR GPKRASKIRKLFNL K+DDVR+YV Sbjct: 114 VIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYV 159 >11_04_0329 - 16442298-16443734 Length = 478 Score = 29.5 bits (63), Expect = 1.4 Identities = 19/57 (33%), Positives = 24/57 (42%) Frame = -1 Query: 396 RILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 226 R+L A G + + CAP M LAS+ P + LRF S RRG Sbjct: 56 RLLAAHAALSPPGAVLRLLASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112 >03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-780116, 780301-780339,781091-781159,781275-781445,781533-781598, 782533-782601,782993-783060,783308-783430,784095-784228, 784412-784506,784600-784644,784755-784814,785548-785599, 785674-785714,785857-785921,786704-786755,787021-787092 Length = 612 Score = 29.1 bits (62), Expect = 1.8 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = -2 Query: 374 DLDGGELHRQSVQEFPVHLCGQ*PGLRLKG*HQQCNHEQTCVSS 243 D+D ++ + F + GQ P + L G H + NHEQTCV++ Sbjct: 333 DVDNDRINEADKEPFSGNHFGQ-PKI-LSGKHFRLNHEQTCVTA 374 >09_04_0080 + 14393797-14393894,14395100-14395202,14395307-14395427, 14396208-14396287,14396702-14396878,14396992-14397215, 14397881-14397887,14398807-14398888,14399188-14399384 Length = 362 Score = 28.3 bits (60), Expect = 3.2 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Frame = +2 Query: 20 PNGMSSI*MVDTTPSSMKAYGR*-----MCNLLATMEVISGAGGNDKQGFPMKQGVLTNS 184 PN +SS M+D T + + N+ T + S A GND GF G ++S Sbjct: 34 PNSVSS--MIDVTSDEVAICNNDGENAKLANISTTKDSSSSAAGNDSSGFKW-LGPESHS 90 Query: 185 RVR----LLMSKGHSCYRPRRDGER 247 + R +L++KG + RR G+R Sbjct: 91 KKREELQILLAKGIYIHVIRRRGDR 115 >05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691 Length = 404 Score = 27.5 bits (58), Expect = 5.6 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 341 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLL 457 + D E P+ + + + K+ L ED +VVKRLL Sbjct: 165 MDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLL 203 >03_06_0524 - 34502286-34502609,34502998-34503084,34503280-34503360, 34503962-34504114,34504898-34504954,34505050-34505296, 34505412-34505527,34506074-34506225,34506713-34506902, 34506976-34507169,34507256-34507388 Length = 577 Score = 27.5 bits (58), Expect = 5.6 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = -1 Query: 210 PFDIKRRTRLLVRTPCFI---GKPCLSLPPAPEITSIVARRLHIQRPYA 73 PF++ R R++ +P + C+ + +PEI + V +R + RP A Sbjct: 324 PFEVYRALRIVNPSPYMAYLQARGCILVASSPEILTRVEKRTIVNRPLA 372 >03_05_0592 + 25952603-25952983,25953197-25953547 Length = 243 Score = 27.1 bits (57), Expect = 7.3 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +2 Query: 308 IVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 451 +V + E+PGL E + R+ + + +KE +RRY+V+R Sbjct: 157 VVARVFDELPGLERLEAVTDVENVRSQRALEKAGFRKEGVLRRYIVRR 204 >02_05_0114 + 25958834-25961296 Length = 820 Score = 27.1 bits (57), Expect = 7.3 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = -2 Query: 131 RHRR*PPLSLEDCTFSAHTLS 69 RH R PPL L C FS T S Sbjct: 15 RHLRIPPLGLSSCPFSVLTAS 35 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,675,449 Number of Sequences: 37544 Number of extensions: 303015 Number of successful extensions: 739 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 724 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 737 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 919380308 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -