SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C01
         (462 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   157   5e-39
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   156   7e-39
11_04_0329 - 16442298-16443734                                         29   1.4  
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78...    29   1.8  
09_04_0080 + 14393797-14393894,14395100-14395202,14395307-143954...    28   3.2  
05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691     27   5.6  
03_06_0524 - 34502286-34502609,34502998-34503084,34503280-345033...    27   5.6  
03_05_0592 + 25952603-25952983,25953197-25953547                       27   7.3  
02_05_0114 + 25958834-25961296                                         27   7.3  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  157 bits (380), Expect = 5e-39
 Identities = 76/106 (71%), Positives = 88/106 (83%), Gaps = 2/106 (1%)
 Frame = +2

Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 304
           GG DKQGFPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ L
Sbjct: 54  GGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINL 113

Query: 305 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV 442
           VIV+KG  ++PGLTD E PR  GPKRASKIRKLFNL K+DDVR+YV
Sbjct: 114 VIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYV 159


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  156 bits (379), Expect = 7e-39
 Identities = 76/106 (71%), Positives = 87/106 (82%), Gaps = 2/106 (1%)
 Frame = +2

Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 304
           GG DKQGFPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ L
Sbjct: 54  GGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINL 113

Query: 305 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV 442
           VIV+KG  ++PGLTD E PR  GPKRASKIRKLFNL K+DDVR+YV
Sbjct: 114 VIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYV 159


>11_04_0329 - 16442298-16443734
          Length = 478

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -1

Query: 396 RILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 226
           R+L A       G    +   + CAP   M       LAS+  P + LRF S  RRG
Sbjct: 56  RLLAAHAALSPPGAVLRLLASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112


>03_01_0099 +
           778521-778736,779521-779775,779831-779924,780064-780116,
           780301-780339,781091-781159,781275-781445,781533-781598,
           782533-782601,782993-783060,783308-783430,784095-784228,
           784412-784506,784600-784644,784755-784814,785548-785599,
           785674-785714,785857-785921,786704-786755,787021-787092
          Length = 612

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 374 DLDGGELHRQSVQEFPVHLCGQ*PGLRLKG*HQQCNHEQTCVSS 243
           D+D   ++    + F  +  GQ P + L G H + NHEQTCV++
Sbjct: 333 DVDNDRINEADKEPFSGNHFGQ-PKI-LSGKHFRLNHEQTCVTA 374


>09_04_0080 +
           14393797-14393894,14395100-14395202,14395307-14395427,
           14396208-14396287,14396702-14396878,14396992-14397215,
           14397881-14397887,14398807-14398888,14399188-14399384
          Length = 362

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
 Frame = +2

Query: 20  PNGMSSI*MVDTTPSSMKAYGR*-----MCNLLATMEVISGAGGNDKQGFPMKQGVLTNS 184
           PN +SS  M+D T   +           + N+  T +  S A GND  GF    G  ++S
Sbjct: 34  PNSVSS--MIDVTSDEVAICNNDGENAKLANISTTKDSSSSAAGNDSSGFKW-LGPESHS 90

Query: 185 RVR----LLMSKGHSCYRPRRDGER 247
           + R    +L++KG   +  RR G+R
Sbjct: 91  KKREELQILLAKGIYIHVIRRRGDR 115


>05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691
          Length = 404

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 341 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLL 457
           + D E P+ +  +    + K+  L  ED    +VVKRLL
Sbjct: 165 MDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLL 203


>03_06_0524 -
           34502286-34502609,34502998-34503084,34503280-34503360,
           34503962-34504114,34504898-34504954,34505050-34505296,
           34505412-34505527,34506074-34506225,34506713-34506902,
           34506976-34507169,34507256-34507388
          Length = 577

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -1

Query: 210 PFDIKRRTRLLVRTPCFI---GKPCLSLPPAPEITSIVARRLHIQRPYA 73
           PF++ R  R++  +P       + C+ +  +PEI + V +R  + RP A
Sbjct: 324 PFEVYRALRIVNPSPYMAYLQARGCILVASSPEILTRVEKRTIVNRPLA 372


>03_05_0592 + 25952603-25952983,25953197-25953547
          Length = 243

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 308 IVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 451
           +V +   E+PGL   E    +   R+ +  +    +KE  +RRY+V+R
Sbjct: 157 VVARVFDELPGLERLEAVTDVENVRSQRALEKAGFRKEGVLRRYIVRR 204


>02_05_0114 + 25958834-25961296
          Length = 820

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 131 RHRR*PPLSLEDCTFSAHTLS 69
           RH R PPL L  C FS  T S
Sbjct: 15  RHLRIPPLGLSSCPFSVLTAS 35


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,675,449
Number of Sequences: 37544
Number of extensions: 303015
Number of successful extensions: 739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -