Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_C01
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 157 5e-39
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 156 7e-39
11_04_0329 - 16442298-16443734 29 1.4
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78... 29 1.8
09_04_0080 + 14393797-14393894,14395100-14395202,14395307-143954... 28 3.2
05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691 27 5.6
03_06_0524 - 34502286-34502609,34502998-34503084,34503280-345033... 27 5.6
03_05_0592 + 25952603-25952983,25953197-25953547 27 7.3
02_05_0114 + 25958834-25961296 27 7.3
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 157 bits (380), Expect = 5e-39
Identities = 76/106 (71%), Positives = 88/106 (83%), Gaps = 2/106 (1%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 304
GG DKQGFPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ L
Sbjct: 54 GGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINL 113
Query: 305 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV 442
VIV+KG ++PGLTD E PR GPKRASKIRKLFNL K+DDVR+YV
Sbjct: 114 VIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYV 159
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 156 bits (379), Expect = 7e-39
Identities = 76/106 (71%), Positives = 87/106 (82%), Gaps = 2/106 (1%)
Frame = +2
Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 304
GG DKQGFPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ L
Sbjct: 54 GGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINL 113
Query: 305 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV 442
VIV+KG ++PGLTD E PR GPKRASKIRKLFNL K+DDVR+YV
Sbjct: 114 VIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYV 159
>11_04_0329 - 16442298-16443734
Length = 478
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = -1
Query: 396 RILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 226
R+L A G + + CAP M LAS+ P + LRF S RRG
Sbjct: 56 RLLAAHAALSPPGAVLRLLASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112
>03_01_0099 +
778521-778736,779521-779775,779831-779924,780064-780116,
780301-780339,781091-781159,781275-781445,781533-781598,
782533-782601,782993-783060,783308-783430,784095-784228,
784412-784506,784600-784644,784755-784814,785548-785599,
785674-785714,785857-785921,786704-786755,787021-787092
Length = 612
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 374 DLDGGELHRQSVQEFPVHLCGQ*PGLRLKG*HQQCNHEQTCVSS 243
D+D ++ + F + GQ P + L G H + NHEQTCV++
Sbjct: 333 DVDNDRINEADKEPFSGNHFGQ-PKI-LSGKHFRLNHEQTCVTA 374
>09_04_0080 +
14393797-14393894,14395100-14395202,14395307-14395427,
14396208-14396287,14396702-14396878,14396992-14397215,
14397881-14397887,14398807-14398888,14399188-14399384
Length = 362
Score = 28.3 bits (60), Expect = 3.2
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Frame = +2
Query: 20 PNGMSSI*MVDTTPSSMKAYGR*-----MCNLLATMEVISGAGGNDKQGFPMKQGVLTNS 184
PN +SS M+D T + + N+ T + S A GND GF G ++S
Sbjct: 34 PNSVSS--MIDVTSDEVAICNNDGENAKLANISTTKDSSSSAAGNDSSGFKW-LGPESHS 90
Query: 185 RVR----LLMSKGHSCYRPRRDGER 247
+ R +L++KG + RR G+R
Sbjct: 91 KKREELQILLAKGIYIHVIRRRGDR 115
>05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691
Length = 404
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 341 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLL 457
+ D E P+ + + + K+ L ED +VVKRLL
Sbjct: 165 MDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLL 203
>03_06_0524 -
34502286-34502609,34502998-34503084,34503280-34503360,
34503962-34504114,34504898-34504954,34505050-34505296,
34505412-34505527,34506074-34506225,34506713-34506902,
34506976-34507169,34507256-34507388
Length = 577
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -1
Query: 210 PFDIKRRTRLLVRTPCFI---GKPCLSLPPAPEITSIVARRLHIQRPYA 73
PF++ R R++ +P + C+ + +PEI + V +R + RP A
Sbjct: 324 PFEVYRALRIVNPSPYMAYLQARGCILVASSPEILTRVEKRTIVNRPLA 372
>03_05_0592 + 25952603-25952983,25953197-25953547
Length = 243
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 308 IVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 451
+V + E+PGL E + R+ + + +KE +RRY+V+R
Sbjct: 157 VVARVFDELPGLERLEAVTDVENVRSQRALEKAGFRKEGVLRRYIVRR 204
>02_05_0114 + 25958834-25961296
Length = 820
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 131 RHRR*PPLSLEDCTFSAHTLS 69
RH R PPL L C FS T S
Sbjct: 15 RHLRIPPLGLSSCPFSVLTAS 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,675,449
Number of Sequences: 37544
Number of extensions: 303015
Number of successful extensions: 739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -