Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C01
         (462 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              197   4e-51
SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)                29   1.9  
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   2.5  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     28   3.3  
SB_43009| Best HMM Match : NHase_beta (HMM E-Value=0.46)               27   7.6  
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)                 27   10.0 
SB_48944| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_31395| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  197 bits (480), Expect = 4e-51
 Identities = 88/110 (80%), Positives = 100/110 (90%)
 Frame = +2

Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVI 310
           GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVI
Sbjct: 21  GGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVI 80

Query: 311 VRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLP 460
           V+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNL KEDDVR+YV++R LP
Sbjct: 81  VKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLP 130


>SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)
          Length = 848

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 177 LTAVYVS*CQKATLATDHVVTVRGNASLFVVALLML 284
           L+++  + C KATLA D+V++ +GN+   ++  L+L
Sbjct: 472 LSSMLSNGCTKATLACDNVISEKGNSFQRILGSLIL 507


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 260 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRK 400
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 350 GEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVK 448
           G    + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_43009| Best HMM Match : NHase_beta (HMM E-Value=0.46)
          Length = 543

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 98  LLATMEVISGAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 268
           L AT  ++ G GG  +QG   K+G    +  + L++ G S  R R   + K +  +G
Sbjct: 417 LEATHCMVGGGGGPGRQGIGSKRGPKERTSGQRLLNTGTSGKRRRLSPKCKGEKSKG 473


>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
          Length = 273

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
 Frame = +2

Query: 110 MEVISGAGGN-DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDG---ERKRKSVRGCIV 277
           +EV  G GG+ DK+   +++      + R   +K  SC +        + K KSV+   V
Sbjct: 145 VEVTCGGGGSSDKRKEKLQEKKKKFKKKRA--AKKASCEKETSSSNVSDNKNKSVKATTV 202

Query: 278 DANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASK-IRKLFNLKKEDDVRRYVVK 448
           D + S   L   R  AQE   L DG   ++L    A K + K   L+K  + R  +V+
Sbjct: 203 DKSASENKLKRKRNSAQE--NLDDGVKRKKLKDAGAMKSLVKELELEKLVEQRSELVQ 258


>SB_48944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 206 KGHSCYRPRRDGERKRKSVRGC 271
           KGH CY  +  G  KR+  R C
Sbjct: 18  KGHGCYAKQLSGFDKRQLTRSC 39


>SB_31395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 206 KGHSCYRPRRDGERKRKSVRGC 271
           KGH CY  +  G  KR+  R C
Sbjct: 18  KGHGCYAKQLSGFDKRQLTRSC 39


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 348  SVSPGISCAPLRTMTRAKTERLASTMQPRTDL 253
            +V+PG + AP  T+    T  L ST+ P T +
Sbjct: 3512 TVTPGSTAAPETTVAPGTTVALESTVAPETSI 3543


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,407,433
Number of Sequences: 59808
Number of extensions: 336664
Number of successful extensions: 788
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)