Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C01
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   177   3e-45
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U23449-3|AAC24301.1|  579|Caenorhabditis elegans Nuclear hormone...    28   2.8  
AF273773-1|AAG15122.1|  555|Caenorhabditis elegans nuclear recep...    28   2.8  
AF273772-1|AAG15121.1|  443|Caenorhabditis elegans nuclear recep...    28   2.8  
U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical p...    27   8.6  
L14710-6|AAA28079.1|  227|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  177 bits (431), Expect = 3e-45
 Identities = 82/110 (74%), Positives = 94/110 (85%)
 Frame = +2

Query: 116 VISGAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSV 295
           V+   GGNDKQGFPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S 
Sbjct: 49  VVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSA 108

Query: 296 LALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVV 445
           L+LVIV+KG  EI GLTD  +PR+LGPKRASKIRKLFNL K DDV +YV+
Sbjct: 109 LSLVIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVI 158


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -1

Query: 372 PRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRGL*QEWPFDIKR 193
           P    T+P+ +P  +  P  T T AKT + ++T   +T     +P+      + PFD  +
Sbjct: 269 PTTTTTTPTTTPTTTTTPTTTTTTAKTTK-STTTTTKTTKTTSTPTTTTTTPKTPFDTSK 327

Query: 192 RT 187
            T
Sbjct: 328 CT 329


>U23449-3|AAC24301.1|  579|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 22 protein.
          Length = 579

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 145 LVVTAGTGDNLHCR*KIAHSAPIRFHR 65
           +++T  TGD +HC+  +++S P   H+
Sbjct: 259 ILLTPATGDRMHCQRVLSNSPPFDIHQ 285


>AF273773-1|AAG15122.1|  555|Caenorhabditis elegans nuclear receptor
           NHR-22 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 145 LVVTAGTGDNLHCR*KIAHSAPIRFHR 65
           +++T  TGD +HC+  +++S P   H+
Sbjct: 235 ILLTPATGDRMHCQRVLSNSPPFDIHQ 261


>AF273772-1|AAG15121.1|  443|Caenorhabditis elegans nuclear receptor
           NHR-22 protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 145 LVVTAGTGDNLHCR*KIAHSAPIRFHR 65
           +++T  TGD +HC+  +++S P   H+
Sbjct: 123 ILLTPATGDRMHCQRVLSNSPPFDIHQ 149


>U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical
           protein C45G9.6a protein.
          Length = 542

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 281 HQQCNHEQTCVSSHRHDVVCSKSGLLTSRDVHGC*SGLPVS*GSPACRY 135
           H+QC +   C+S  R    C+ +G    RD+  C + +  + GS  C Y
Sbjct: 417 HRQCLYHSDCISGQR----CTPTG----RDIATCETDISATIGSIQCFY 457


>U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical
           protein ZK418.11 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 286 PFSLSPGHCPQRC 324
           P S +PG CPQRC
Sbjct: 13  PKSCNPGECPQRC 25


>L14710-6|AAA28079.1|  227|Caenorhabditis elegans Hypothetical
           protein K02D10.4 protein.
          Length = 227

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 52  YHSIFYESVWALNVQSSSDNGGYL 123
           + S  Y  +W  N++ S  +GGYL
Sbjct: 16  FESFAYFQIWLANIEDSRCDGGYL 39


>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
            protein Y48G1C.5 protein.
          Length = 1161

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 296  LALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVV 445
            L L   +K  QE+        P  +GPK A +IR L  L  + +   +VV
Sbjct: 1010 LLLTFGKKRTQEVTHYQYTGWPEHMGPKDAEEIRYLLKLVTDSERPVFVV 1059


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,079,704
Number of Sequences: 27780
Number of extensions: 235396
Number of successful extensions: 566
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)