Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_C01
         (462 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   156   6e-39
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             155   1e-38
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    31   0.50 
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   2.7  
At1g18030.1 68414.m02230 protein phosphatase 2C, putative / PP2C...    28   2.7  
At5g07820.1 68418.m00896 expressed protein                             27   4.7  
At4g04920.1 68417.m00715 expressed protein                             27   4.7  
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ...    27   4.7  
At4g12020.1 68417.m01912 protein kinase family protein similar t...    27   6.2  
At2g43795.1 68415.m05444 hypothetical protein                          27   6.2  
At4g14160.3 68417.m02185 transport protein, putative similar to ...    27   8.2  
At4g14160.2 68417.m02186 transport protein, putative similar to ...    27   8.2  
At4g14160.1 68417.m02184 transport protein, putative similar to ...    27   8.2  
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    27   8.2  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  156 bits (379), Expect = 6e-39
 Identities = 78/106 (73%), Positives = 86/106 (81%), Gaps = 2/106 (1%)
 Frame = +2

Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 304
           GG DKQGFPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL L
Sbjct: 54  GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNL 113

Query: 305 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV 442
           VIV+KG  ++PGLTD E PR  GPKRASKIRKLFNLKKEDDVR YV
Sbjct: 114 VIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYV 159


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  155 bits (376), Expect = 1e-38
 Identities = 77/106 (72%), Positives = 86/106 (81%), Gaps = 2/106 (1%)
 Frame = +2

Query: 131 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLAL 304
           GG DKQGFPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL L
Sbjct: 54  GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNL 113

Query: 305 VIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV 442
           VIV+KG  ++PGLTD E PR  GPKRASKIRKLFNL KEDDVR+YV
Sbjct: 114 VIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYV 159


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 341 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRL 454
           + +G V ++   ++A +  K   +KKEDDVR+  +KRL
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRL 325


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 329 EIPGLTDGEVPRRLGPKRASKIRKLFNLKKE 421
           E+PGL D  V   L PK+ ++++KL   K++
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKLRREKRK 650


>At1g18030.1 68414.m02230 protein phosphatase 2C, putative / PP2C,
           putative contains similarity to protein phosphatase 2C
           GI:3777604 from [Rattus norvegicus]
          Length = 351

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 1   EVERFIPERDVKYLNGGYHSIFYESVWALNVQSSSDNGGYLRC 129
           E + F+ E DV    G  H++  E VW +   +S D  G LRC
Sbjct: 67  EKKEFLVEADVAEDKGARHTM--EDVWVVLPDASLDFPGTLRC 107


>At5g07820.1 68418.m00896 expressed protein
          Length = 561

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 363 RGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDL 253
           + TSPSVSP +       +   K  R++    P+ DL
Sbjct: 161 KSTSPSVSPVVRTVKKTNLVVNKASRISQNKSPKEDL 197


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 45  WWIPLHLL*KRMGAECAIF 101
           +WIP+H+L      ECA+F
Sbjct: 143 FWIPIHILIPERPTECAVF 161


>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 641

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 377 KRASKIRKLFN--LKKEDDVRRYVVKRLLP 460
           KR + I KL +  L++ +D+R Y+V  LLP
Sbjct: 579 KRVNVIEKLMSKTLREREDMRSYIVHELLP 608


>At4g12020.1 68417.m01912 protein kinase family protein similar to
           mitogen-activated protein kinase [Arabidopsis thaliana]
           GI:1255448; contains Pfam profiles PF02671: Paired
           amphipathic helix repeat, PF03106: WRKY DNA-binding
           domain, PF00560: Leucine Rich Repeat, PF00069: Protein
           kinase domain, PF00931: NB-ARC domain
          Length = 1798

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 21/63 (33%), Positives = 25/63 (39%)
 Frame = -2

Query: 278 QQCNHEQTCVSSHRHDVVCSKSGLLTSRDVHGC*SGLPVS*GSPACRYRRHRR*PPLSLE 99
           ++CNHE    S+      C K G       +GC  G   S   P C  R H      S E
Sbjct: 166 RRCNHEDCTRSAWGRTEFCVKHGGGARCKTYGC--GKSASGPLPFC--RAHGGGKKCSHE 221

Query: 98  DCT 90
           DCT
Sbjct: 222 DCT 224


>At2g43795.1 68415.m05444 hypothetical protein
          Length = 170

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +2

Query: 221 YRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRK 400
           YR + D ER  K  +G    +++S       RKG +E   +   E+PR    KR S IRK
Sbjct: 54  YRAQLDAERAMKLSKGRNYSSDIS-------RKGRRESSQIESAEIPRGRKAKRES-IRK 105


>At4g14160.3 68417.m02185 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 620

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 295 LSPGHCPQRCTG 330
           + PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275


>At4g14160.2 68417.m02186 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 772

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 295 LSPGHCPQRCTG 330
           + PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275


>At4g14160.1 68417.m02184 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 621

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 295 LSPGHCPQRCTG 330
           + PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 233 RDGERKRKSVRGCIV--DANLSVLALVIVRKGAQEIPGLTD-GEVPRRL 370
           R G  K   V   +V  D    ++ +   ++G  ++PG+TD G VPR++
Sbjct: 264 RAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKI 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,549,957
Number of Sequences: 28952
Number of extensions: 221545
Number of successful extensions: 518
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)