Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B24
         (356 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DD8621 Cluster: PREDICTED: hypothetical protein;...    36   0.27 
UniRef50_A2Y8N2 Cluster: Putative uncharacterized protein; n=2; ...    35   0.36 
UniRef50_UPI0000357952 Cluster: PREDICTED: similar to RNP partic...    34   0.83 
UniRef50_Q0V0L3 Cluster: Putative uncharacterized protein; n=1; ...    33   1.1  
UniRef50_Q099S9 Cluster: Putative uncharacterized protein; n=1; ...    31   4.4  
UniRef50_Q9FWE2 Cluster: Putative uncharacterized protein OSJNBb...    31   4.4  
UniRef50_Q4UWU7 Cluster: Cardiolipin synthase; n=6; Proteobacter...    31   5.9  
UniRef50_Q09DH0 Cluster: Putative uncharacterized protein; n=1; ...    31   5.9  
UniRef50_A0QCD1 Cluster: PPE family protein; n=2; Mycobacterium ...    31   5.9  
UniRef50_A0HDW5 Cluster: ABC transporter related; n=2; Proteobac...    31   5.9  

>UniRef50_UPI0000DD8621 Cluster: PREDICTED: hypothetical protein;
           n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 560

 Score = 35.5 bits (78), Expect = 0.27
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 46  DGSGSSDGWARRVSSVMSARVLATWSGRRLLATRSCLDSFDEPRPW 183
           +GSG+  GW+R  S V +      W  R +  TRS   + D  RPW
Sbjct: 439 EGSGAKGGWSREASGVPAPGGGWPWVSREVPGTRSFGPAPDSTRPW 484


>UniRef50_A2Y8N2 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 234

 Score = 35.1 bits (77), Expect = 0.36
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
 Frame = -3

Query: 195 LAMFPWARLIERVEAGAR------RQKPPAGPRRQDAGGHD**HSPRPPITATTTILAVM 34
           +A  PW  ++E +E G +      RQ P AGPR       +  H P+P   A  +  A  
Sbjct: 1   MAKSPWRTVLEPLEHGEQHRLEEMRQHPVAGPRASSGDAAERRHLPKPAAAANCSSSA-- 58

Query: 33  GSATPQNSAS 4
            +ATP N+A+
Sbjct: 59  -TATPPNAAT 67


>UniRef50_UPI0000357952 Cluster: PREDICTED: similar to RNP particle
           component; n=1; Mus musculus|Rep: PREDICTED: similar to
           RNP particle component - Mus musculus
          Length = 183

 Score = 33.9 bits (74), Expect = 0.83
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +1

Query: 49  GSGSSDGWARRVSSVMSARVLATWSGRRLLATRSCLDSFDEPRPWKHR 192
           G G   G      S +S+R L T+  RR +A R C D +D    W  R
Sbjct: 27  GQGPFSGLIFNQESELSSRPLCTFPARRKVACRECSDHWDSGESWTPR 74


>UniRef50_Q0V0L3 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 407

 Score = 33.5 bits (73), Expect = 1.1
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -3

Query: 174 RLIERVEAGARRQ----KPPAGPRRQDAGGHD**HSPRPP 67
           RL ER EA  R +    +PP GP R D  G D  H P+PP
Sbjct: 100 RLQEREEAQRRAEEEANRPPPGPYRPDTTGLDTSHLPKPP 139


>UniRef50_Q099S9 Cluster: Putative uncharacterized protein; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Putative
           uncharacterized protein - Stigmatella aurantiaca DW4/3-1
          Length = 440

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 131 GFWRRAPASTLSMSRAHGNIAKSDYTF 211
           G+WRR  A  L+M   +GN+  +++TF
Sbjct: 4   GWWRRGMAGVLAMGLTYGNVCWAEWTF 30


>UniRef50_Q9FWE2 Cluster: Putative uncharacterized protein
           OSJNBb0015I11.20; n=3; cellular organisms|Rep: Putative
           uncharacterized protein OSJNBb0015I11.20 - Oryza sativa
           (Rice)
          Length = 437

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -3

Query: 147 ARRQKPPAGPRRQDAGGHD**HSPRPPITATTTILAVMGSA 25
           A+ Q+PP  P R DAGG      P PP  A  +I+A   +A
Sbjct: 8   AKLQRPPVAPPRGDAGG-----EPPPPSPALPSIVAARAAA 43


>UniRef50_Q4UWU7 Cluster: Cardiolipin synthase; n=6;
           Proteobacteria|Rep: Cardiolipin synthase - Xanthomonas
           campestris pv. campestris (strain 8004)
          Length = 520

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +2

Query: 98  PPASWRRGPAGGFWRRAPASTL 163
           PPA W R PA   WRR  A  L
Sbjct: 490 PPAVWTREPAASVWRRGAAKVL 511


>UniRef50_Q09DH0 Cluster: Putative uncharacterized protein; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Putative
           uncharacterized protein - Stigmatella aurantiaca DW4/3-1
          Length = 1216

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 92  SCPPASWRRGPAGGFWRRAPASTLSMSRA 178
           S  P  W+ GPAG  W+ +PA+ L    A
Sbjct: 167 SFDPGVWQAGPAGSGWQESPAAALEAVEA 195


>UniRef50_A0QCD1 Cluster: PPE family protein; n=2; Mycobacterium
           avium|Rep: PPE family protein - Mycobacterium avium
           (strain 104)
          Length = 395

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 107 SWRRGPAGGFWRRAPASTLSMS 172
           SW  GPA G W  APA+  S S
Sbjct: 347 SWHEGPAAGMWNGAPAAGASSS 368


>UniRef50_A0HDW5 Cluster: ABC transporter related; n=2;
           Proteobacteria|Rep: ABC transporter related - Comamonas
           testosteroni KF-1
          Length = 297

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 192 AMFPWARLIERVEAGARRQKPPAGPRRQDA 103
           A+FPW  ++E +E G   +K P   RR+ A
Sbjct: 101 ALFPWRTVLENIEVGLEIRKIPKRERRETA 130


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 351,512,157
Number of Sequences: 1657284
Number of extensions: 6406738
Number of successful extensions: 18565
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18552
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11941480628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)