Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B24
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    25   3.5  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    24   8.0  

>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -2

Query: 235 FTSKMNSVESIVRFSDVSMGAAHRKSRGRSASPEAAXXXXXXXXXXX*LMTLAAPTHHC 59
           FT+ +NS++ +   S V +  A   S G S +                L  LAAP H C
Sbjct: 404 FTTALNSIDPLQNLSTVDIRTAILNSTG-SRATLFLSEMAFDILVKPQLNLLAAPCHQC 461


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 70  WARRVSSVMSARVLATWSGR 129
           W R +  V+   +LA+W+GR
Sbjct: 100 WDRSIQKVVYLYLLASWTGR 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,381,442
Number of Sequences: 5004
Number of extensions: 23796
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)