Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_B24
(356 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0138 - 1051408-1051625,1052790-1052889,1053724-1054085,105... 35 0.016
09_03_0187 - 13253787-13254509 30 0.61
01_06_0604 + 30536172-30537143 29 1.1
10_08_0915 + 21539651-21540226,21540276-21541139 28 2.5
10_02_0007 - 4100613-4100993,4101026-4101074,4102966-4103393 28 2.5
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 27 3.3
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339... 27 3.3
03_05_0099 - 20764949-20765233 27 4.3
02_02_0079 - 6594365-6594757 27 4.3
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064... 27 5.7
10_08_0975 - 21978642-21979520 27 5.7
08_01_0388 + 3432177-3433154 26 7.6
07_03_0552 + 19383475-19383559,19383807-19385129,19385211-19385299 26 7.6
05_01_0191 - 1380872-1382029 26 7.6
>06_01_0138 -
1051408-1051625,1052790-1052889,1053724-1054085,
1055055-1055079
Length = 234
Score = 35.1 bits (77), Expect = 0.016
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = -3
Query: 195 LAMFPWARLIERVEAGAR------RQKPPAGPRRQDAGGHD**HSPRPPITATTTILAVM 34
+A PW ++E +E G + RQ P AGPR + H P+P A + A
Sbjct: 1 MAKSPWRTVLEPLEHGEQHRLEEMRQHPVAGPRASSGDAAERRHLPKPAAAANCSSSA-- 58
Query: 33 GSATPQNSAS 4
+ATP N+A+
Sbjct: 59 -TATPPNAAT 67
>09_03_0187 - 13253787-13254509
Length = 240
Score = 29.9 bits (64), Expect = 0.61
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 83 CHQSCPPASWRRGPAGGFWRRAPA 154
C PP+SW GP GG W A A
Sbjct: 147 CSDLEPPSSWLLGPLGGGWADADA 170
>01_06_0604 + 30536172-30537143
Length = 323
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 70 WARRVSSVMSARVLATWSGRRLLATRSCLDSFDE 171
W R S +S+R L+T S RRL+++ S D +DE
Sbjct: 151 WKERAS--VSSRRLSTHSSRRLMSSSSSDDEYDE 182
>10_08_0915 + 21539651-21540226,21540276-21541139
Length = 479
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 72 GAASVISHVRPRPGDVVRPAASGDALLPRLF 164
GAA+ ++ VR R RP A+GDA RL+
Sbjct: 257 GAAAALAGVRLRVAGAPRPPAAGDAAGGRLY 287
>10_02_0007 - 4100613-4100993,4101026-4101074,4102966-4103393
Length = 285
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 174 RLIERVEAGARRQKPPAGPRRQDAG 100
R +ERV G + P GPRR D G
Sbjct: 86 RAVERVHGGGEGRLLPNGPRRGDVG 110
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 117 VVRPAASGDALLPRLFR*AAPM 182
+V P A+ ALLPRL R AAP+
Sbjct: 98 IVLPTAAAAALLPRLRRAAAPL 119
>01_05_0293 -
20532559-20532572,20532573-20532798,20532926-20533960,
20534670-20534996
Length = 533
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 102 PRPGDVVRPAASGDALLPR 158
PRP D PAA+GDA+LPR
Sbjct: 84 PRP-DPPAPAAAGDAVLPR 101
>03_05_0099 - 20764949-20765233
Length = 94
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 46 DGSGSSDGWARRVSSVMSARVLATWSGRRL 135
DG G + W RR+S +A ++A W R L
Sbjct: 16 DGVGGAARWRRRISWAAAAPMVARWWRRPL 45
>02_02_0079 - 6594365-6594757
Length = 130
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 55 GSSDGWARRVSSVMSAR-VLATWSGRRLLATRSC 153
G S GW + +++ R V+ W R LATR C
Sbjct: 17 GRSTGWPEKRRRMVTRRPVMRGWMTMRSLATRGC 50
>12_01_1031 -
10605581-10606088,10606360-10606420,10606448-10606491,
10606664-10608382,10609848-10610791
Length = 1091
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 34 HHC*DGSGSSDGWARRVSSVMSARVLATWSGRRLLATRSCLDS 162
HH G GSS A+++ S M AR+ + RR +A L S
Sbjct: 106 HHRGGGDGSSTAGAKKMISSMIARLRGELNRRRWIADEVTLFS 148
>10_08_0975 - 21978642-21979520
Length = 292
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 151 RSASPEAAXXXXXXXXXXX*LMTLAAPTHHCYHYHPS 41
RS SP AA + AA HH +H+HP+
Sbjct: 57 RSVSPYAAARRSDACAYASSSSSSAAAAHH-HHHHPN 92
>08_01_0388 + 3432177-3433154
Length = 325
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 86 HQSCPPASWRRGPAGGFWRRAPASTLSMSRAHGNIAKSDYTFDR 217
H + P W + A RR P S + +++ G A + +FD+
Sbjct: 188 HPAGEPQRWEKIAAAFGGRRTPESVIRAAKSGGGAAAAGASFDQ 231
>07_03_0552 + 19383475-19383559,19383807-19385129,19385211-19385299
Length = 498
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 78 ASVISHVRPRPGDVVRPAASGDALLPRLF 164
+++I HV +PG +RP A + LF
Sbjct: 319 SNLIKHVNDKPGTPMRPGAQASVYIYELF 347
>05_01_0191 - 1380872-1382029
Length = 385
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 113 RRGPAGGFWRRAPA-STLSMSRAHGNIAKS 199
RRG GG RRAPA S + +SR G ++
Sbjct: 30 RRGGGGGRSRRAPATSPMFVSRGRGGAGRA 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,961,810
Number of Sequences: 37544
Number of extensions: 197002
Number of successful extensions: 711
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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