Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B24
         (356 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)                29   1.1  
SB_47424| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_13715| Best HMM Match : Peptidase_A17 (HMM E-Value=3.6e-10)         27   4.5  

>SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)
          Length = 325

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 85  TLAAPTHHCYHYHPS 41
           TLA P H+ YH+HPS
Sbjct: 250 TLATPCHYHYHHHPS 264


>SB_47424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/62 (25%), Positives = 24/62 (38%)
 Frame = -2

Query: 232 TSKMNSVESIVRFSDVSMGAAHRKSRGRSASPEAAXXXXXXXXXXX*LMTLAAPTHHCYH 53
           TS  N  +     S+V   A  R  +  + S E              +  LA+  HHC+H
Sbjct: 79  TSSTNYQDMAANSSEVDAQALVRHGQASACSEERGDGQRQAYKYLIEI--LASAKHHCHH 136

Query: 52  YH 47
           +H
Sbjct: 137 HH 138


>SB_13715| Best HMM Match : Peptidase_A17 (HMM E-Value=3.6e-10)
          Length = 596

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -1

Query: 233 HFKNEFCRKYSQI*RCFHG-RGSSKE--SRQERVARS 132
           HF   + ++Y    RCFHG  G+S E  SR+E ++RS
Sbjct: 554 HFWQRWKQEYLTSLRCFHGATGASGEHASRKETLSRS 590


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,816,514
Number of Sequences: 59808
Number of extensions: 196157
Number of successful extensions: 488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)