Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B24
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   2.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   7.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 177 PMETSLNLTILSTEFIFEVNYSTCIQM 257
           P+   ++LTI S + I EVN    I M
Sbjct: 60  PLLVGMDLTIASFDAISEVNMDYTITM 86


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 88  MTLAAPTHHCYHYHPSSD 35
           M L+  TH+ Y+  PSS+
Sbjct: 255 MALSPVTHNLYYNSPSSE 272


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 84   HSPRPPITATTT 49
            HSP+  +TATTT
Sbjct: 1368 HSPQITLTATTT 1379


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 79  AAPTHHCYHYHPSSDGQRH 23
           A  + H  HY P  DG R+
Sbjct: 425 AMASRHPMHYLPFGDGPRN 443


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 119 GPAGGFWRRAPASTLSMSRAH 181
           GP  G ++   AS L+ +R H
Sbjct: 625 GPVKGIYQHNVASGLTKARGH 645


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,139
Number of Sequences: 438
Number of extensions: 2001
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)