Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B24
         (356 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (...    26   8.5  
At4g24250.1 68417.m03480 seven transmembrane MLO family protein ...    26   8.5  

>At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit
           (IRX5) nearly identical to cellulose synthase
           [Arabidopsis thaliana] GI:27462651; contains Pfam
           profile PF03552: Cellulose synthase
          Length = 1049

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 72  PPITATTTILAVMGSATPQNSASC 1
           PPI    TIL+++    P N  SC
Sbjct: 307 PPIITANTILSILAVDYPVNKVSC 330


>At4g24250.1 68417.m03480 seven transmembrane MLO family protein /
           MLO-like protein 13 (MLO13) identical to membrane
           protein Mlo13 [Arabidopsis thaliana]
           gi|14091596|gb|AAK53806; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 478

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +2

Query: 125 AGGFWRRAPASTLSMS---RAHGNIAKSDY 205
           AGGFWRR+   +   S   + +G++ KS+Y
Sbjct: 213 AGGFWRRSVVISWVRSFFKQFYGSVTKSEY 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,439,637
Number of Sequences: 28952
Number of extensions: 131342
Number of successful extensions: 334
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)