Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_B23
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   298   4e-82
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   297   5e-82
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   0.44 
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    28   0.77 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.4  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   1.8  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.1  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   4.1  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    25   5.5  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   5.5  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   7.2  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   7.2  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   9.5  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   9.5  
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  298 bits (731), Expect = 4e-82
 Identities = 134/176 (76%), Positives = 153/176 (86%)
 Frame = +3

Query: 15  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 194
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 195 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 374
           +SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120

Query: 375 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY 542
           KP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I VSKKWGF++Y
Sbjct: 121 KPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQY 176


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  297 bits (730), Expect = 5e-82
 Identities = 134/176 (76%), Positives = 153/176 (86%)
 Frame = +3

Query: 15  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 194
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 195 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 374
           +SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120

Query: 375 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY 542
           KP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I VSKKWGF++Y
Sbjct: 121 KPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQY 176


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 39  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 215
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 216 G 218
           G
Sbjct: 94  G 94


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
 Frame = +3

Query: 285 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 452
           L P    R+     C        G     GK +G      AR+ IG+ +  +      K 
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158

Query: 453 QVIEALRRAKFKFPGRQKIYVSK 521
               AL++A F  PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 96  DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 215
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -1

Query: 409 PIRTRATVPWGFPNAPRIPVWSLSAPA---HDNILLMRMTWKGCSLIRMWN*SLPQFFTR 239
           P+RT +   WG+ N   IP+W +  PA   +  I    +T      +R +  +L +FFTR
Sbjct: 81  PLRTLSRW-WGYVNRIEIPLW-MRVPAFGLYSKIFGCNLTEADPDDVRQYK-NLAEFFTR 137

Query: 238 YL 233
            L
Sbjct: 138 KL 139


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 210 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 91
           P P +S+ R  Q+LSA +  S+P   S  PS   GSL  +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +3

Query: 117  DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 260
            ++ KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ KN  K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 388 VPWGFPNAPRIPV 350
           + W FPNAP IPV
Sbjct: 46  IKWIFPNAPSIPV 58


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 258 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 362
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 425 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSA 327
           RH G+S  +++ C L +  +T    LE + S A
Sbjct: 94  RHGGVSLLNSKDCRLKYSSKTAKQYLEKLKSLA 126


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 155 WEVIHCRSLFAQVENTDLWVRHTPT 81
           + ++H  +LFA  EN D ++   PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 72  SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 182
           S FC   PDPK       K  A  DD P +  H+ S++
Sbjct: 84  SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 121 WAKRERQWMTSH 156
           W +RERQW+  H
Sbjct: 91  WLRRERQWLQRH 102


>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -3

Query: 530 APLLRYIDLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPS 351
           +PLL  I  L  R  + S ++ LN +         +  GLS+ H+RY +   P R    +
Sbjct: 92  SPLLSPISPLKLRFHKYSVSKQLNSV-------GKQGFGLSSNHSRYASPSSPARLARGA 144

Query: 350 L-EPISSS 330
           L E +S+S
Sbjct: 145 LGEELSNS 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,991
Number of Sequences: 5004
Number of extensions: 51074
Number of successful extensions: 159
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)